1. Home
  2. Mutant Lines
  3. GT17249

GT17249

CSHL Arabidopsis genetrap mutant lines

Original: GT17249

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17249

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19319716 [Map]; Strand: c
      • AT2G47020.1 - [+] show detail - Peptide chain release factor 1
        Distance: 0; Region: exon11 (3UTR)
      • AT2G47015.1 - [+] show detail - MIR408; miRNA
        Distance: -64; Region: promoter
    Flanking Genome Sequence: GT17249 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTAGTAC 
    ATCACAAAAG GCGTACAGAA ACACGATTCC AAAATCTATT TAAACCCTAA 
    GAAATAACAC AAACACAAAG GAACTAACTC AAAGGAACTG GCCAATTTCA 
    AAGGTTAGAT TGGTATTGCA ATGAAAGAAG AAGACAAAGC GGTAATGAGA 
    GAGAGACAGG GAACAAGCAG AGCATGGATT GAGTTTACTA AAACATTAAA 
    CGACTCTGTT TTGTCTCTAC CCATGCACTG CCTCTTCCCT GGCTCCCTCT 
    TTTTTTCTCT ATATTTCTCT CTCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19319654 [Map]; Strand: c
      • AT2G47015.1 - [+] show detail - MIR408; miRNA
        Distance: -126; Region: promoter
    Flanking Genome Sequence: GT17249 - 5-prime edge 
    CTTTCTCCCT GTGTACTACC CAGAATTCAC CAGAAATATT TGTACTCCCT 
    TGTTTTGCAA AGTCTTGTAC TGCGATCTGG CTAAAGCGTA TATTCATTAT 
    TCCCAACTGT ATTCCTAACC CTCTAAATTA GCTGGAGGGT TCTGGTTTTT 
    ACGACTATGT GTGTTAAATC GGAAGGTAGA GAGAAATAAT TTAGCTGCCA 
    CGTGGTAGGA CCCAAAGTAC ATCGCAAGTA CACTTTTTTT TTTTGCTGGA 
    GGGTGGATTT TAGAACGAAA TTTTTTTTCC AGAACCGGTA CTACACAATT 
    ACATCGAAAT TTGTTGGGTT TACTTTAAAA ACAAAAACTT TGGATGGGTG 
    GCATTTTTTG AAAAAAAATT TGTCCCAAGT GAATTTAAAT TAGTTGGGAA 
    TTTTATTTTA AAAAATTGAT TTGCCGACAA AAAAAAACAA TTTTTTTAAA 
    ATTTGCTTTA AACCAGGTAA TAAAAACTTC GAATTCAGAG AAACCCCTTT 
    CGGAAATTGC TTCT

AT2G47015.1

Model type
miRNA
Short Description
MIR408; miRNA
Curator Summary
Encodes a microRNA that targets both a Laccase and Plantacyanin-like family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AUGCACUGCCUCUUCCCUGGC
Link
InterPro Scan - TAIR

AT2G47020.1

Model type
Protein coding
Short Description
Peptide chain release factor 1
Computational Description
Peptide chain release factor 1; FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: mitochondrion, cytoplasm; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT3G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR