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GT17255

CSHL Arabidopsis genetrap mutant lines

Original: GT17255

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17255

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25843383 [Map]; Strand: w
      • AT5G64660.1 - [+] show detail - CYS, MET, PRO, and GLY protein 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17255 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGCCAA 
    AGCAATGAGG AAAGATGATC TCTGCATCAC TGTTCCTACC TTCTTCCGAT 
    GTCCTATATC TCTCGACGTT ATGAAATCTC CGGTGAGTCT TTGCACCGGC 
    GTTACCTACG ATCGAGCTAG TATCCAACGG TGGCTTGACG GCGGGAATAA 
    CACTTGTCCG GCGACGATGC AGATTCTTCA GAATAAAGAT TTCATACCGA 
    ATCGGACTCT TCAACGTCTT ATCGAGATTT GGTCTGATTC TGTTCGTCGT 
    CGAACTTGTG TTGAATCGGC GGAATTAGCT GCTCCGACGA GAGACGAGAT 
    CGCCGATGCG ATCGATAGAG TGAAGATCGA GAAAGAAGAA AGAGATGATC 
    GCGAGGTTTT GTCGAAGATT GTTCGATTCG GGAGAGAATC TGATGATAAC 
    AGAGGATTTC TCGCCGGANA AGATGATTTC GTGATACTTC TCGTGGATCT 
    GATTAACCAG GTGGATTTCG AAACCACCTC CGCCGCGAAA TCTCTGGTTG 
    TTCAAGAAGC GGTGAAGATT CTGAGTACGA TTCGAAGCAA AGTCTCAGAT 
    CGGAGACGGT TTTCGAATCT GATTTTAACC AACGGTCGAG ATCGGTTATC 
    GGTGATCGTC TACTTGTTTA AAACCGGGAA TGTCGAATTG AAAATTGATT 
    GCGCCGGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1417558 [Map]; Strand: w
      • AT2G04170.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon6 (CDS)
      • AT2G04170.2 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon7 (CDS)
      • AT2G04170.3 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon7 (CDS)
      • AT2G04170.4 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: GT17255 - 5-prime edge 
    CCTACTTTCT CCCTGCTGCT AACGATATGA TAGTGTTAAC TCCCACACCA 
    TAATCGCTTC GAGTAGGGTA CCAAGCTGCA GCTGCAAAAC AAGAAACAAA 
    AAACAACTTA TATCAACTAT TAACTTTATT CAAACACTCG TGGACATTAA 
    CATGTTTTAC TTATTATTTT TGGTTAGTAC TTACAATATA TTTGTGCGTG 
    GTTGGAGCTT CGTTGATTCT TTAACCGCAG ATTAACCGCT CCCCAAGTGT 
    TTGTAGCAAC TGCGTTTGGC TTATGGCCTT GAGCATATAG GAAGATTGGG 
    ATCGCTTGTG ATCTTCCATC ACCAGTACCT TTTGGGTTAA ATCCTAATCT 
    CCTGATTATA CATCAACCAA AAACCGTTAT TATACTTGAC CACGGCAAAA 
    AAATTCACAT AATGGGTGCA ATCTTTATGA TTTTTTCCGG AATAAGGTCT 
    AAATTATATG GTTACCAAAA AAAAACTAAC CAATATCGGT CTTCAACAAG 
    AAAATCATCA GAGTAATAAA ATTTATCTTC CAAGTTAGAG AAATGAAGTA 
    TCTTCCAAGT GAAAACATTG TTTGGAGGGT TGG

AT2G04170.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.2

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.3

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.4

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64660.1

Model type
Protein coding
Short Description
CYS, MET, PRO, and GLY protein 2
Computational Description
"CYS, MET, PRO, and GLY protein 2" (CMPG2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G09800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR