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GT17269

CSHL Arabidopsis genetrap mutant lines

Original: GT17269

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17269

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3311213 [Map]; Strand: c
      • AT3G10590.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17269 - 3-prime edge
    TCATCCCTAC GTAGTAGTAC GGGACCTCCT CCAAAGGTTT CGGCAGATGC 
    TGGGCGACAT TCACCAAACG CTTGTTATCC GGAGGGAATT GCGACAGAGC
    TGACTTAAAA CGCCTGTTGT CGTCCTCCGT CCAGAGTGGA CTCGAAGCCA
    TAGTATCCGA GAAAATGAGA AAAAAAAAAA GAGAGGGTTA AAATTTCAAG
    AAACAAAAAA ACCGTTTTGG GGAATATTTA CCGAAAAAGC AATGGTTTGT
    TCTTTTTAAT TTGG
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8137781 [Map]; Strand: w
      • AT1G22985.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1861; Region: intergenic
      • AT1G22990.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1384; Region: intergenic
    Flanking Genome Sequence: GT17269 - 5-prime edge
    TAATATTCTA CGACCACAAT TACTTCTCTA ATCTGGATTG AAAAAGGGCC 
    ACCGTATACA TTTCTTTAAA TAACGTTTTT CAGATTTTAT TATAAAATCT
    AGGGGACTAC CATATTATAT TGTATAAACG TCCATATCCA TCTTAGAAAT
    GTTATCAATA ATAGGTCTGG AAAATTTCAT GGAACCACAC CTATTTTGGA
    GCTGAATTCA ATCCCCCAAC GTACTTTCTC GTTCTTGTTA TGTTTCGTTG
    TCGCTTTGTT TATATTTCTT CTTATTTTAG GGGTTTTTTC AGTTCGATTT
    TGTTTTATTT TTAGTTAGCG GACGAAAATA TACAGATGGT AGTACTAACT
    TTTCTCCTAG CATTCTCATC TATGTGTGTG TGTTATACAT TTATATCGGT
    GCTCTTGGTT GACCTTAGAA GGTACTTTAT ATATGGTTCG AGGGTCCCTA
    TGGATAAGTT CAGATTAAAC ATCTAAAA

AT1G22985.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71130.1); Has 5644 Blast hits to 5509 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5631; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22990.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10590.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT4G09450.1); Has 905 Blast hits to 899 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 806; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Link
InterPro Scan - TAIR