1. Home
  2. Mutant Lines
  3. GT17287

GT17287

CSHL Arabidopsis genetrap mutant lines

Original: GT17287

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17287

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18449926 [Map]; Strand: w
      • AT3G49740.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17287 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCTCTTCT 
    GCTTCTTTCC ACATACCAGC TCCTGCGTAG ATATTGGACA GTTGAACATA 
    AACTGATGGA TCATCCTTCT CTTTCTCCAT TAGTAACTTC GCAACCATCT 
    TCCCTAGCTT CAAATCTCCA TGAGCAGCAC AAGCACTAAA CAAAGCCCAC 
    CACACATCTA CCCGAGACCC GATGGTCTTT TCGCTGATTT TCACCAAGCT 
    TTCCGCTTCA TCTCCAGTGG ACCACTCGAC CAAGAAGGTC AACTAAGCAT 
    GAAAAATGAT CTACATTTCG TATCACACCG TGAAATTCCA CCATTGAGTT 
    GAAAATCTCG AGTCCCTCTT CCACTAAACC GGCGTGGCTG CAAGCAGAGA 
    GAACCGCTGA GAATGTGGCT GCATCGGGAA TGACCTTTCC TTCATCTTGC 
    ATTGTCTTGT AGGTATTAAC CGCGTTCTCT CCTTCACCGT GTCTCGAGTA 
    TGCAGAGATC AGAGAATTCC ATGACACAAC ATCTTTTTCA GACATCTGAT 
    TGAACACTTC AAGAGAGTTT TGTATAGTCC CGCATTGAGA GTACATGTTT 
    ATGAGGGCAT TACCTATCAA TGTCTCCTTG AATTGGCCGT GTCTAAGGAC 
    GTAAGCGTGA GTTTGGCTTC CGAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18450089 [Map]; Strand: w
      • AT3G49740.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT17287 - 5-prime edge 
    CGGTTTTATT GAATCGAAAA CCGGTTATCG TTTTATTTGT TTATTTAATT 
    TTTTTATAGA AATAGAAAAT TTGTTACAAA AGTGACATAA AATTTGTAGG 
    GAGATAAAGA AAATTTGACG TTCAACTTTT GAAAAGCATA ATCATTAGCC 
    TCTGCTTATT ATACAATGGG GATGATGATG ATCATGGTAT CCTAAAGTAG 
    AGTTATTGGT ATTATTATGT CCAAACAAAG GCTGGTAAAA ACACAAAACG 
    CAGCGTTTAA TCTATCTGAC AAATCCACTG GCATAAACGT ACCCAAATCA 
    GTATTAGGGT CCACTTGTCT CTCAAAAAAA ATCCCGCGAT ATCCGTTAGT 
    ACCAACAATA TTATAATTTC CATAATTATT ATTTCTCATC TCTAATAATT 
    TCTTCCAAAT ATTTCTCAGT ATAACTAAAT TTCTTCCATA TTTACTAATT 
    TACAGAATAT TCTCATACCT TAAAACAGAA CTGAAACATA AATATAAAAG 
    AATAGAACCC CCTACAGTAT CAAGAATCTT CTTCAAAGCC GTAAT

AT3G49740.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02010.1); Has 46649 Blast hits to 13426 proteins in 218 species: Archae - 0; Bacteria - 21; Metazoa - 50; Fungi - 114; Plants - 45895; Viruses - 0; Other Eukaryotes - 569 (source: NCBI BLink).
Link
InterPro Scan - TAIR