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GT17294

CSHL Arabidopsis genetrap mutant lines

Original: GT17294

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17294

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 151994 [Map]; Strand: w
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -82; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17294 - 3-prime edge 
    CCGACCGTTA CCGACCGTTT TCATCCCTAA TGAGGAGGAT CTTCTCTCCT 
    CTCGAACCGG GATTTCCATT TTCACCGGTT GTGGCAATAT TTGTCTCTAT 
    TTTGTATATT TCTCTACTTG GGGAGGATTA GAGACATGAT GATTGAAAGC 
    AGACAAGACA AGACATTCTT GTTTATGTTT GTTCTTGCCA CTTGTGGTTC 
    TGGTTTGCCT AAGATTAAGG TTAGCCGTGG AGTAACAGAA TGAGAGAACC 
    TGGGTTTATT GTGACCGTCT CATATAGGTT CAAGTATCAA CATGGGCTTA 
    TTGATTCGAG CACGTAATGA TTCTCATACA ATACATTCTG TAAGAATTTA 
    CATATTAGCC ATTAGAAGAT TATCAAAGTG ACAAGAACTT TCAAACTAAG 
    AAGAAAGACA TAATCCATGG TTTTAACTGT TAATGTCGAT TAAGTCAAAT 
    ATCATACAAC CAACAAATAA GGTTTAAACT AATTAAACCC TCTTAGAGAG 
    CAACACTTAT AACATTTAAG GCTGGTTTTG ACAAATCACC TTACAAAATT 
    GATCAAGGAG AAGGTCTACC ATTTGACGAC CGTGAGCCAG GGCTAGACAA 
    ACCTGTATTG AGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152067 [Map]; Strand: w
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -155; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17294 - 5-prime edge 
    CCTACTTTCT CCCTGCTCCT ATCCTCTGCC GGACCATTAC ACAAACCATC 
    TCCTTAGCAG CTGACGACGC CATCGATAGC GGTCCATCCT CTCCGCTTGT 
    CGTCAAAGTC TCTGTCTTCG AAACAGAGCA TGAGACGACC AAGCTTATCC 
    ACGCGCCGTC AACTCTGCTC GGTGAAACCA CCGGAGACGC TGATTTTCCT 
    CCCATTCAAA GCTTTAGAGA TGCTAAACTT GTTTGTGTGG TTGAAACGTC 
    TAAGCTTTGG GAAATAGCTG CACCTATAGC TTTCAACATT CTTTGTAATT 
    ACGGTGTTAA CTCCTTCACA AGCATCTTCG TTGGCCATAT CGGCGATCTT 
    GAGCTTTCTG CCGTCGCCAT CGCTCTCTCC GTCGTCTCTA ATTTCTCCTT 
    TGGTTTCTTG GTGATTAAAA TAACCTTCCT CTACTCTGCT TTTTTCCTCC 
    TCTGTTTCTT GCGTTTTCTC TAACTTTCTA GAAAAAAACT GCAGCTGGGA 
    ATGGCGAGTG CGTTGGAAAC GTTATGTGGA CAAGCGTTTG GAGCGGGACA 
    AATGGATATG TTAGGTGTTT ATATGCAGCG TTCTTGGCTT ATCTCCTCGG 
    AACTTCCGTC TGCTTGCTTC

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR