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GT17295

CSHL Arabidopsis genetrap mutant lines

Original: GT17295

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17295

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1856555 [Map]; Strand: w
      • AT3G06130.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1492; Region: intergenic
      • AT3G06140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 127; Region: intergenic
    Flanking Genome Sequence: GT17295 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAG 
    TAAAAGAAAA GAGAGAAAAA GAGGAGAAGT TGAAGAAGAA GAAGAATCAT 
    TTTTCTGCCT TTTTGCCTAT TAGGCTATAT AAGTTTAAAA CATCAATTGA 
    AGAAAAAGCT GCCCGAGGAA AAAGAATGTT TCCCACTGAG GTTTAGCTTA 
    AAAGAAACCA CAAAAGGTCC TTTTAAAATT AAAAATTCGA TTTTTTTTCT 
    TTTGACAGAA TGGTCAAACT TTTGAGTTAA GAAAAGTCTT AATATGATCT 
    GTTATTATGA AAAACAGTTT TCATGGTGGA TTTTTTTTTT TTTTTTCCGG 
    GGGGGAGGGG GGGGGGAAAA AATTGGGCCT TTTGGGTTAA TTTTTAGGGG 
    GAAAAATTCT TTTTTTTAAA AGATTTTTTT TTTGCCAAAA GGGGAAAGGT 
    TTTCCCGGGG GCCCCCAAAA AAAATATTTC CTTTTTAAGG GCAAAAAGGA 
    AAAAAAGGGC TTTTCCCAAA AATTGGAAAA GAAAACCCAC CCCCGGGGGA 
    AAAGGGGGAA CCCCCCCAAA AGGTTGGGGA AATAAGGGTT TTTTTGGGGG 
    GAAAAGGAAA AAGAAAAAAA AAAAAAAAAA AAAGGGGGGG GGGGCCCTTT 
    TTTTTTGAAA AACCCTTTTG GGGCCCAACT TTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1856608 [Map]; Strand: w
      • AT3G06130.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1545; Region: intergenic
      • AT3G06140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 74; Region: intergenic
    Flanking Genome Sequence: GT17295 - 5-prime edge 
    CCTACTTTCT CCCTGCTTTT ACTTATATCT CTGCAAATAC CAAATTCTTC 
    AAGTTCTCTA ATAATTTCTA ACTTTCTGGT GAGAGATAAA TGGTAAATAA 
    TATGGCCGTA GCAACTCTGC AAATGTTAAT ATCTAGATCT TGTGAATAAA 
    TTGTTTGGAT ACTATGAGAG ACTTGGACCA CAACATAGGA TCCTTGTGCT 
    TAAGCAAACC AACAAAAGCA TTCAATTACA AACATTAAGT AGTTTGGTGA 
    GAGTGTTAGG AAGTTATCTA TACATGTACT GATGATGCTT ATATCTTGCA 
    AATACAAAGC ATTAGATCAA ACAAATCTAT ATGCGGAATG AAGGAAGTTG 
    CACAACAATG ATAGCGGAAA TACAGATTCA GATATGGAGG GTTTCAGAGA 
    AAAATGAAGA AAGAATCAAG AATGGTGTTT TATGTAAAGA AAGAACCTTT 
    TTTGTACTAG TGTTGTTCAT CACTACTGTT CATTTTGATC TCTAAGAGCT 
    CTTCGATGGG TTGTCGACAA ATCGGACATT TGTTGGACTG AAGCCTCAAT 
    TCTTTAGCAC AGTCGCTACA CATGCACTGC AAAGAAGGAC ATACAGCATT 
    ATTATAAGAC GTTTGAATAA AGCAACTACA AAGT

AT3G06130.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.1); Has 122077 Blast hits to 41053 proteins in 2213 species: Archae - 188; Bacteria - 33817; Metazoa - 49902; Fungi - 6812; Plants - 10774; Viruses - 1540; Other Eukaryotes - 19044 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06140.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19080.1); Has 7743 Blast hits to 5478 proteins in 376 species: Archae - 2; Bacteria - 144; Metazoa - 2405; Fungi - 531; Plants - 3352; Viruses - 272; Other Eukaryotes - 1037 (source: NCBI BLink).
Link
InterPro Scan - TAIR