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GT17296

CSHL Arabidopsis genetrap mutant lines

Original: GT17296

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17296

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1856555 [Map]; Strand: w
      • AT3G06130.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1492; Region: intergenic
      • AT3G06140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 127; Region: intergenic
    Flanking Genome Sequence: GT17296 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAG 
    TAAAAGAAAA GAGAGAAAAA GAGGAGAAGT TGAAGAAGAA GAAGAATCAT 
    TTTTCTGCCT TTTTGCCTAT TAGGCTATAT AAGTTTAAAA CATCAATTGA 
    AGAAAAAGCT GCCCGAGGAA AAAGAATGTT TCCCACTGAG GTTTAGCTTA 
    AAAGAAACCA CAAAAGGTCC TTTTAAAATT AAAAATTCGA TTTTTTTTCT 
    TTTGACAGAA TGGTCAAACT TTTGAGTTAA GAAAAGTCTT AATATGATCT 
    GTTATTATGA AAAACAGTTT TCATGGTGGA TTTTTTTTTT TTTTTTCCGG 
    GGGGGAGGGG GGGGGAAAAA AATTGGGCTT TTTTGCTTAA TTTTTAGGGG 
    GAAAATTCCT TTTTTTTAAA AGTTTTTTTT TTGGCTAAAA GGGAAAGGGT 
    TTCCCCGGGG GCCCCCAAAA AAAATATTTC CTTTTAAGGG GCAAAACGGA 
    AAAAAAGGGC TTTTCCCAAA ATTTTGAAAA GAAAACCAAC CCCAGGGGAA 
    AAAGGGGGCC CCCCCCAAAA AGGTTGGGGA AATAAGGGTT TTTTTGGGGG 
    GAAAANGAAA AAAAAAAAAA AAAAAAAAAA AAAGAGGGGG GGGCCCTTTT 
    TTTTTTGAAA AACCCTTTTG GGCCCCACCT TTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3432383 [Map]; Strand: c
      • AT5G10870.1 - [+] show detail - chorismate mutase 2
        Distance: 0; Region: intron1 (5UTR)
      • AT5G10880.1 - [+] show detail - tRNA synthetase-related / tRNA ligase-related
        Distance: -310; Region: promoter
    Flanking Genome Sequence: GT17296 - 5-prime edge 
    CCTACTTTCT CAAAGAGGTC CAAAACACTT TAGCATTGAG GAAGAAGAAG 
    AAGAAAGCTT CATTTTTCCA GGTAATAAGT CCTTTGACTT TCGTCATTCA 
    CAATTGCTCA TCTCTATAGT TTCTATGAAT GAATTGTTTG CTTACTTATA 
    CACCATCAAG CAGGGGATAC AGTTGAAGCG GCATGGCAAG AGTCTTCGAA 
    TCGGATTCGG GTTCTGGTTG TTCCAATGTA CTGAGTCTTG ACTTAATCAG 
    AGAATCGTTG ATTAGGCAAG AAGACACCAT CGTCTTCAGC TTGATCGAGA 
    GAGCTAAGTT TCCACTCAAT TCTCCTGCTT TCGAGGAATC TCGTTGTCTA 
    GATTCTGGAA GTTTCTCTTC TCTCACTGAG TTTTTCGTCA GAGAGACAGA 
    AATCATCCAA GCTAAGGTTT GCTTCCCATT TTAAAAACTG ATCCTTTTGC 
    TAAAATTAGA TACAGAGATA TCAATGCTTC GTTTGATTCG GTTTTGGTAT 
    AGCATTGTTT TAGATTGTTC CATGAAATTA GCAGAAAGTA AGCTACAAGT 
    CAAC

AT3G06130.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.1); Has 122077 Blast hits to 41053 proteins in 2213 species: Archae - 188; Bacteria - 33817; Metazoa - 49902; Fungi - 6812; Plants - 10774; Viruses - 1540; Other Eukaryotes - 19044 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06140.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19080.1); Has 7743 Blast hits to 5478 proteins in 376 species: Archae - 2; Bacteria - 144; Metazoa - 2405; Fungi - 531; Plants - 3352; Viruses - 272; Other Eukaryotes - 1037 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10870.1

Model type
Protein coding
Short Description
chorismate mutase 2
Curator Summary
Encodes chorismate mutase AtCM2.
Computational Description
chorismate mutase 2 (CM2); CONTAINS InterPro DOMAIN/s: Chorismate mutase, type II (InterPro:IPR020822), Chorismate mutase, AroQ class, eukaryotic type (InterPro:IPR008238); BEST Arabidopsis thaliana protein match is: chorismate mutase 3 (TAIR:AT1G69370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10880.1

Model type
Protein coding
Short Description
tRNA synthetase-related / tRNA ligase-related
Computational Description
tRNA synthetase-related / tRNA ligase-related; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G62120.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR