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GT17297

CSHL Arabidopsis genetrap mutant lines

Original: GT17297

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17297

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1856554 [Map]; Strand: w
      • AT3G06130.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1491; Region: intergenic
      • AT3G06140.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 128; Region: intergenic
    Flanking Genome Sequence: GT17297 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAAGT 
    AAAAGAAAAG AGAGAAAAAG AGGAGAAGTT GAAGAAGAAG AAGAATCATT 
    TTTCTGCCTT TTTGCCTATT AGGCTATATA AGTTTAAAAC ATCAATTGAA 
    GAAAAAGCTG CCCGAGGAAA AAGAATGTTT CCCACTGAGG TTTAGCTTAA 
    AAGAAACCAC AAAAGGTCCT TTTAAAATTA AAAATTCGAT TTTTTTTCTT 
    TTGACAAAAT GGTCAAACTT TTAGTTAAAA AAAAGTCTTA ATAGGATCTG 
    TAATAAAAAA AAACGGTTTT CATGGGGAAT TTTTTTTTTT TTTTTCGGGG 
    GAATTGGGTG GGGAAAAAAA TTTTTTTCTT TAGAAGATTT TTTATACGAA 
    AAATTGGCCT TGTCTAAAAG GTTTTTTTTA TGCAAAAAGG GAAAAGGGTT 
    TCCGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18134584 [Map]; Strand: c
      • AT5G44900.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain family protein
        Distance: -862; Region: promoter
    Flanking Genome Sequence: GT17297 - 5-prime edge 
    ATATAGAGAG AAGTTGAAGC CAATGTATTC TAAAATAGAG TTTTAGAGAA 
    AAAATAGAGT AGGGTTAGAG ATGCTGCAAA AAACGCATTA GGCAAGTGAG 
    CCCCACTCTT GATCATTTTG CTTATGATAC AATCATTCTA GCTAGGGATC 
    ATCCATGCGA TTTAAAATTA AGATCAAAGA CACGAAATAG TGTAAGGTAC 
    TCTAGTAACA TAACACAAAC AATAAAACCG AATTGGCTTT TAATGTTTCT 
    TTACCTAAGA CTTTTAAACC CTTTTAATCA CATATACCGA AAAATTTGGG 
    ACCTAATTAA ACCCCAAGTT TCCATCATTC ATGAAGTATC ACGAAATATT 
    ATCTCTGACT TTCTGAGGTG TGGGCGGTTA TGTTTGCAGT CAATCTTCAC 
    TAGTTCCTCC AAGCACTATT TGACTTTGGG AACCTCTTGG AGAAGATCAA 
    ACCCGAAATT TCGAGTACAT AAATTTTTTC AAGAGGTGTT GTAACTTGTA 
    AGTTTCCCCT GTTCCGCTTG AAGCCATCTA TACAGACATT GACCCCTCGA 
    AATCTAAAGT TGGCGATAGA ACGGTGGTTG GTCACTGGTC GGAGGTACCT 
    TGCGGAAGAC GTTAACACAC AAAAATGCCC TGGGATTTAG AACGCATTAA 
    ATCTTTGTTA AAATATTT

AT3G06130.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.1); Has 122077 Blast hits to 41053 proteins in 2213 species: Archae - 188; Bacteria - 33817; Metazoa - 49902; Fungi - 6812; Plants - 10774; Viruses - 1540; Other Eukaryotes - 19044 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06140.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19080.1); Has 7743 Blast hits to 5478 proteins in 376 species: Archae - 2; Bacteria - 144; Metazoa - 2405; Fungi - 531; Plants - 3352; Viruses - 272; Other Eukaryotes - 1037 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G44900.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain family protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain family protein; FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, N-terminal protein myristoylation, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45000.1); Has 1604 Blast hits to 1520 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1600; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR