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GT17300

CSHL Arabidopsis genetrap mutant lines

Original: GT17300

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17300

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17300 - 3-prime edge
    TTTTTCTATA AAATTTTGAC AGAAACATTA TTACTCCGTC GTTCACGACA 
    CCTATACTCT C
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10605447 [Map]; Strand: w
      • AT4G19440.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -927; Region: promoter
      • AT4G19440.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -927; Region: promoter
    Flanking Genome Sequence: GT17300 - 5-prime edge
    CCTACTTTCT CCCTGCTCAC GATTGCATTT GCATATATTA TAGATGTAGG 
    ACATACTCGG TGAAAATCTT AGTAGACTAG AAAGCAATTG ATCAACATTT
    AGTAACAAGC TATCACCACA AGTTCACTAA ATATAGTATA TATTTTTAAA
    ACAAATACCA ACACTTTCAT TAAAAGCACA TAAATAGAAA CATTTAAGAG
    GACAGATACA AGTCCCATTG ATTATTTTTA TTTTTTGACC AAATACTAAC
    ACACGTTTTA AAATAAGAAA ATACTAACAC TTGCAGTAAA AGTTACTACT
    AGTAAATATA GAGATTTAAG AGGACATGAT ACAATTAACT CTTAATTGAT
    ACTGTATTAT GAAGTATCAT AAATAATGTA TGCACATATC TCAATCATAA
    TGTGTAAGTA AATTACTAAT TTTTTATCTC ACTATTTTAA CCATAGTGCC
    TACTGCTGCC TACTATCTTT AACCATCTCC AAAAGACACC ATTTGTCTTT
    TTAACTATAC TAAAACAATC AAAACTTTTA AAACCAATCA TATCTCATTT
    TAAGAAAATA GGTTAAATTA TCTAATATAA TAAATAAAAA TCTAAAAAGG
    TTGCCACGTA AATAGAAGAA TTGA

AT4G19440.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G19440.2

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1).
Link
InterPro Scan - TAIR