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GT17323

CSHL Arabidopsis genetrap mutant lines

Original: GT17323

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17323

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9441262 [Map]; Strand: c
      • AT1G27180.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17323 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    TCGAAGAGCA CAGAGTTCGT TGACTTATTG AAGGAGATCG GAAGCTTTGA 
    GATGGAGAAT GGCGTTTTGC CGCATAGGCT CAAGTACAAC GTATTTCTCA 
    GCTTCAGAGG CTTCGACACC CGCGAAATTT TCTGTGAGCT TCTCTATGTC 
    GCTCTCAACG CGAAGCAAAA GCTCAGGGTC TTCCGTGACA ACGAGGGAAT 
    GCAACGACGG GATGAGATCG GTCCAAGTCT CGACTTAGCT ATGGATGACT 
    CAGCGGCTTC CGTTATATAT CCACTAACTA CGCTAACTCT TCTTGGTGCC 
    TAAATGAATT AGCTATGCTC TGCGATTTTA GATCATCTCT GAAACGTCCC 
    GTCATACCTA TCTTCTATGG AGTCAATCCC GAGGATGTCC GCAAACAGAG 
    CGGTGATTTC GCTAAGGATT TTGAAGAACA CGCCAAAACA TTTAGCGAGG 
    TGGAGATAAA ACGATGGAGG CGAGCTATGA ATTTAGTCGG AAATATCCCT 
    GGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9440608 [Map]; Strand: c
      • AT1G27180.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17323 - 5-prime edge 
    CTTTCTCCCT GCTTCGAAGA ACGCTTTCGG ATTTTGGGAA GCTTTTCGAT 
    TTTTGGCTTT TGTTGACTAA TAATAAATGG TTTCTTTCTC GAACGCTGAA 
    ACGCCACACA GTTCTATCTA CAGTCAATTA GAACGACATG TAGTGTCGAT 
    TCCTTCACTC GTCTTTCTAC TACTCTTAAA CTTGGTTAAT TTTAGTACCA 
    TAGACTCATA GTAGGAAATG AAAGGAAAAG ATGGTTACAT GACTACATCA 
    TTACTAATCT ATATGCCAAA AATATAATAT TACTTGAAAT GAAAAGATTA 
    TAAATTCAAT AATTAAGATT AGAGATGAGA GATTGAAGTC ATACTCGTAA 
    ATTAAACCGG AGAGATTTCC GACTTTAGTC ATAGCTCCTT TCCATCGTTG 
    TATCTTCTCC TCGCCAAATG TTTTTGCAAG TTTTTCAAAA TCATTTTCGA 
    AATGATTGTT CTGTGTCCTA ACTTCCCATG GTTGGACCTT ATAAAAGATC 
    GGAAACACTA GAAGTTCTAG AGATGATCTC ATATCCAAGA GCTTAGCTAA 
    TTCTTCGAGG CGCAGGTGAG AGTTAGCGTA GTTAGCGGAT AAGACGACGA 
    CAAAAGCAAC CGAGTCCTCT ATAGCCTCCA CGAGACTTGG ACGTAGCTCA 
    TGATCATGAT CCACACGTTC CAAATCATCG TTCCAAACCC GCAGCTCTTC 
    CTTGACGAGC GCTTCATAGA GACGATCCGT GAAATTGTGG CTCGTGTCTC 
    TTTGGAAACT GAGGAATGCG TCCCACTTGA CCCTCGAACG TGGATTGGAA

AT1G27180.1

Model type
Protein coding
Short Description
disease resistance protein (TIR-NBS-LRR class), putative
Computational Description
disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptors;ATP binding (TAIR:AT1G27170.1); Has 83534 Blast hits to 33450 proteins in 1183 species: Archae - 68; Bacteria - 4700; Metazoa - 16188; Fungi - 1127; Plants - 56869; Viruses - 12; Other Eukaryotes - 4570 (source: NCBI BLink).
Link
InterPro Scan - TAIR