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GT17328

CSHL Arabidopsis genetrap mutant lines

Original: GT17328

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17328

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 320538 [Map]; Strand: w
      • AT2G01720.1 - [+] show detail - Ribophorin I
        Distance: -274; Region: promoter
      • AT2G01730.1 - [+] show detail - cleavage and polyadenylation specificity factor 73 kDa subunit-II
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17328 - 3-prime edge 
    CCCTAGAAAT AACAACAATT TGAGTTTCAA AACTCGTCGA TGGTCAAAAA 
    TATCTTACTC GTTCGAATCA GAACACAAAT TCAAGTGACC GGAGAAAATT 
    TTGAAGGGGG CGAGAGAAGA AACAGAGTTA GGTCGACAAA CGAATTTGAA 
    TGGCGGCAAA GTGTTCAGTG ACATCGGAAC CGTTAGGAGT TATTACACGT 
    GTCTGATCCA ACCGTCGATA TTTTTGTGGT GTGAAGGCCA ATAATAGTTC 
    ATCTCACTCG A

AT2G01720.1

Model type
Protein coding
Short Description
Ribophorin I
Computational Description
Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT1G76400.1); Has 386 Blast hits to 386 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01730.1

Model type
Protein coding
Short Description
cleavage and polyadenylation specificity factor 73 kDa subunit-II
Curator Summary
a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo
Computational Description
cleavage and polyadenylation specificity factor 73 kDa subunit-II (CPSF73-II); CONTAINS InterPro DOMAIN/s: RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-Casp domain (InterPro:IPR022712), Beta-lactamase-like (InterPro:IPR001279); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73-I (TAIR:AT1G61010.3); Has 5072 Blast hits to 5039 proteins in 1435 species: Archae - 491; Bacteria - 2753; Metazoa - 569; Fungi - 259; Plants - 193; Viruses - 0; Other Eukaryotes - 807 (source: NCBI BLink).
Link
InterPro Scan - TAIR