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Mutant Lines
GT17359

GT17359

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT17359

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17902427 [Map]; Strand: w
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -267; Region: promoter
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -267; Region: promoter
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: GT17359 - 3-prime edge
```
GAAACGGTAG AGGATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
CGTATTTGTC ACCTCCATAT AAACGCCACT ACAACACACA CAATTTTGCT 
TAACTTAGAA ATGATTCGAG CTTGAACAAG GAAGTAGAGA GGAATTTACC 
TTGGAGGAGA GCCTTTCCGG CTATCCAATT GAACTGAAAG TGAGAAGCTT 
ATCCACACGG AGGAGTGAGG ACCTTCTTTC TTTCTTATAC CCCTGTAAAT 
GACTGTTATA TCCCTCAATC CTTCTCGCGT GACTAAAACC CTCCCCTTC
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 18448465 [Map]; Strand: c
- AT3G49730.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: -819; Region: promoter
- AT3G49740.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

GTTTCTTCAA ACACCAGACA AGCATCAACA ACCACTTGGC AATTGAAATA 
CATTGTAATT AGTGCATTCA CAACAGATGA AGCAATAAAA AATCCAGCTT 
TTATAACCAG CGAATGCACC TGCTTACCAA AATCCAAAGA ACCATAGTCA 
CACATACTCA AAATAGTAGC AAACCCAAAC TTATCATGTC GAACACCAAG 
CTTATGCATT TCTCGAAACA ACTCAACACT CGTTTCGTGA TACCCACTCT 
CTTTGCAACC AGTAATCATA GCATTCCAAA TCGCAACATC ATCTCTCTCA 
GGCATTTTAT CAAACACCTC AAAGGCATAC TCTATATCAC CAAGCTTAAA 
ACTTGCACTC AGAAGCGTCG TCCATGAATA AACATCAGGT TCATCTTCCA 
CCTCGACCAA ANNNCCNAGC TGACAGTGAT CGTCAGCTTT CTTGCTAGCC 
TTGGCCTTGA TCAAGATGGG ATGATTGGCA AAGTTCTGGT GAAGAACCCA 
TTTCTTATGG GGTACAGTGT TGATAAAAGG TTACGGCCTA ACACTGAATT 
CTTGAAATCA TCCGTTGGCC TGAGTGAGGA TGGCATTAAG TCGGTGGTCA 
TGAATTTCCC ACAACTTTTG TGCAGAGACG TTAACAAGAT TCTCAAACCA 
AATTATGATT ATTTGAAGGA GTGTGGGTTT GGAG

AT3G49730.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65820.1); Has 44976 Blast hits to 14279 proteins in 285 species: Archae - 4; Bacteria - 30; Metazoa - 692; Fungi - 575; Plants - 42339; Viruses - 0; Other Eukaryotes - 1336 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G49740.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02010.1); Has 46649 Blast hits to 13426 proteins in 218 species: Archae - 0; Bacteria - 21; Metazoa - 50; Fungi - 114; Plants - 45895; Viruses - 0; Other Eukaryotes - 569 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38150.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38150.2

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR