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GT17372

CSHL Arabidopsis genetrap mutant lines

Original: GT17372

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17372

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17902424 [Map]; Strand: w
      • AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -264; Region: promoter
      • AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -264; Region: promoter
      • AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT17372 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGGGACCGT CCCGGTATAT CCCTACTCGT 
    ATACGACACC TCCATATAAA CGCCACTACA ACACACACAA TTTTGCTTAA 
    CTTAGAAATG ATTGGAGCTT GAACAAGGAA GTAGAGAGGA ATTTACCTTG 
    GAGGAGAGCC TTTCCGGCTA TCCAATTGAA CTGAAAGTGA GAAGCTTATC 
    CACACGGAGG AGTGAGGACC TTCTTTCTTT CTTATACCCC TGTAAATGAC 
    TGTTATATCC CTCAATCCTT CTCGCGTGAC TAAAACCCTC CCCTTC

AT4G38150.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38150.2

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.2

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38160.3

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link
InterPro Scan - TAIR