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GT17378

CSHL Arabidopsis genetrap mutant lines

Original: GT17378

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17378

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23815407 [Map]; Strand: w
      • AT1G64170.1 - [+] show detail - cation/H+ exchanger 16
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT17378 - 3-prime edge 
    ACGAGTGCGA TATTTTATTG GTGGGAAAAT CTTCCAAAGG ACCTATGGTT 
    TCAAGATTAC CGGTTATGAA GATAGAGTGT CCAGAACTGG GACCGGACGG 
    AAACTTGATC GTGTCAAATG AGATTTCTAC TTCAGTGTCT GTTTTGGTGG 
    TTCAACAATA CACCGGGAAA GGTCCTTCTG TGGAGGGTTC CGTCTCTGTC 
    CCGGTGGTGG AGACGCCATG AAAATCTGAA AACAGAGGAT TGTGTTTTCT 
    TTACCTTGAA GCACAAACCA TGATGGATAA CACGAAACAC TCTTATGTAT 
    CAACATGCAT GAATCAAACG ACTCCCCTTT TTATGAATTT GTGAGATAAA 
    ACATATTTAG GAATTTGAGT CACTGATTAT ATCATATCCT TAAAACATAT 
    GATTTGATGG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23815805 [Map]; Strand: w
      • AT1G64170.1 - [+] show detail - cation/H+ exchanger 16
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT17378 - 5-prime edge 
    AAGTGAAAAG TTGCTCGAAG CTACCGGAGA ATTGTTGTCG CCGAGACCAC 
    GATCAACCAA AATTCCAACA GAACACGGTG AATTCTCAAG AACTCTTTTG 
    TTAATCCCCT GATACTCCGA TCTCACCGTT TCAAATTCTT TCTCCAGAGA 
    TCTCCATTGC TTATGGAACG GCAAAATCAC AAACGCTGTG CATTTACTAT 
    CAGCAGAGCT ACATATATCC TCATGAATTG TTGACAACGG TGAAATCGCG 
    GTCACAGAAC GCACCGAAAC GCTACTTAGC TTACTAGACG CCTCGAACGC 
    GACCGTAACG GCACTAGAAT TCTCTCTTTT CTTGTTCCAA AAGGGCAAAC 
    CGTTGCTTCT CACCTTTTGA ACCATTCGAA TAGAAGAAGG TCTCTCGGAG 
    AGTTGAGTTA AATGCATAAC GTAAACGCAA AATCTTTCTT TGGTTTCGTT 
    GCTTCCACGA GTAGCTTCCA TTATTTTCAT CATGGGATCA ATATCTTTAC 
    TGCTTTGAAG ACATACCAAA ACCTTAAGCT GCTGCATCTT CTCGCCTTC

AT1G64170.1

Model type
Protein coding
Short Description
cation/H+ exchanger 16
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
cation/H+ exchanger 16 (CHX16); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: stem, male gametophyte, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 17 (TAIR:AT4G23700.1); Has 10345 Blast hits to 10314 proteins in 2156 species: Archae - 371; Bacteria - 8080; Metazoa - 56; Fungi - 195; Plants - 675; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).
Link
InterPro Scan - TAIR