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GT17388

CSHL Arabidopsis genetrap mutant lines

Original: GT17388

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17388

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28350949 [Map]; Strand: w
      • AT1G75510.1 - [+] show detail - Transcription initiation factor IIF, beta subunit
        Distance: -2214; Region: intergenic
      • AT1G75520.1 - [+] show detail - SHI-related sequence 5
        Distance: 613; Region: intergenic
    Flanking Genome Sequence: GT17388 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCATG 
    GACAGGTTTT TACTTAGATA ATATCGTGTC ATTCCATCTA GATTCAACCC 
    CTGTCTACAA TAATATAGGA GGTTAACGTT AGTTATGTGG AGAACGTCAG 
    ATTGTGAGTA AATACGTAAC ATGTGAAATG TTGGCGTAGA TGAATGTAAA 
    CGGATGGTAA TATAAGGTAT TTATATCAAA CTACTTCCCT GCAGAATTAT 
    CAAATTTTTA GCTATTTAAT TATTACTTGC ATGGATCATG GATGTGACTA 
    TCAGTCGTCT GTAGCTAATC CCCATTTACT AATTCTGTCT TACAGAATAA 
    AAACTGGTCG ATGCAGTATA TATATATATA CAAATGACTG ATTAAGACAT 
    ATGATGAAAC TAAAATTGAT TTCGTTTTTC TAATGAGATG ATATAATAAT 
    TTGTTTTATC TATGTGTGAA CTGATACTGT TAACAATAAT AATGATTAGC 
    TAGTACTATT AACAGTACTG TTATAGATTG CTTGATTTAG GACAAGTATA 
    AATGACAGAG GAGATAGATG GAAGTTTCTC AAAAACTGTA GAGTGTCTGA 
    CTCCGGCATG TGATC

AT1G75510.1

Model type
Protein coding
Short Description
Transcription initiation factor IIF, beta subunit
Computational Description
Transcription initiation factor IIF, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; LOCATED IN: mitochondrion, transcription factor TFIIF complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196), Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640); BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit (TAIR:AT3G52270.1); Has 346 Blast hits to 346 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 128; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75520.1

Model type
Protein coding
Short Description
SHI-related sequence 5
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Computational Description
SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR