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Mutant Lines
GT17454

GT17454

CSHL Arabidopsis genetrap mutant lines

Original: GT17454

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17454

Determination of insertion point(s)

3 prime edge [+] show sequence

Not mapped

TACCGACCGT TTTCATCCCT GCAAAAACGA GATTTCCTGA GTCAGATAAG 
ACAAAAGCCA TAAACTACAC AGAGAGTCC

3 prime edge [+] show sequence

Chromosome: 4; Position: 438116 [Map]; Strand: w
- AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
  Distance: -874; Region: promoter
- AT4G01020.1 - [+] show detail - helicase domain-containing protein / IBR domain-containing protein / zinc fin...
  Distance: -970; Region: promoter

AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTGCA 
AAAAACGAGA TTTCCTGAGT CAGATAAGAC AAAAGCCATA AACAACACAA 
AGAGTCCTGC GAGATTGCTC ACTTGGACGG TTGGGCCTAT ATGAAAATTT 
ACTATCTCAA AATTTAACTA AGAGCCCATA AAATCTGTAA GATCTTTGCT 
TTAAATCACA TTGTCTTCAT AGATTTTGTG ATTCATGGTA GATTTGTGAA 
GATCTTTGGT CATCTTTTTG TTTACATTTG GCTTATTGAG TGTAGAGTGT 
GAACAATCTG CTATGAAGTT GGTAAAATTC TTTGGATCCA AACCTTTAAA 
TCGTAGCATA TTTACTATTT CACACTGCTA GGATCTGTTT ATAGCTGATG 
CATTACTGGA ATCTATGATG TTTACTGTGT TGGTCTGATA TATAACAAGT 
TCTGAATTTT AAAATCAAAT TCAATATCGA ATTGGGCTTT TAATTAAGGT 
TAGGCCCATC AAATGTTTTT GACTCTTTAA TAATTCCCTC TCTTTTGTCT 
TTTATTGTAA AATGCACACA ATTTCGAAGA AACTGCCAAT GGAGTCTCCA 
TTTTCCAGCG CCATGCCAAG CTTGACTCTA CGATGATAGC TTATTTGACT 
GCTTCAAAAA AAACTT

AT4G01010.1

Model type: Protein coding
Short Description: cyclic nucleotide-gated channel 13
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G01020.1

Model type: Protein coding
Short Description: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Computational Description: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), K Homology (InterPro:IPR004087), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, C2H2-type (InterPro:IPR007087), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT5G10370.1); Has 13197 Blast hits to 12409 proteins in 1676 species: Archae - 4; Bacteria - 3384; Metazoa - 3503; Fungi - 1989; Plants - 1444; Viruses - 760; Other Eukaryotes - 2113 (source: NCBI BLink).
Link: InterPro Scan - TAIR