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GT17472

CSHL Arabidopsis genetrap mutant lines

Original: GT17472

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17472

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4123932 [Map]; Strand: c
      • AT3G12920.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: -424; Region: promoter
    Flanking Genome Sequence: GT17472 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTTTAT 
    GGATGGTCAA ACCTGACAAT TAATAGATCT TATTGGTAAC AAAAATGTTT 
    GGTGTAAGTT ACTTACTTGC ACCGTTGTAA GATTCATTGT ACACATACGT 
    AAATGCGAAT TTATAAACGG CCAAAACATA ATGGTACTAT ACAATAGAGG 
    TGGCTCATGT GACAAGACTT GCAAGTCTTG TGACTATCTT AAATTATTCA 
    TTGCTTTATC CTTTTAAAAA CCAAAATCAA ATCACAAATT ATTCAAATCA 
    TGCCATTATC TAATTGGAGT AACTCTATAA TAAATTGCTT TGCATGCATG 
    AATTTGAATT TCTGAATCAA TAAATGATTT TATTCGTACA TAAATATTGC 
    TTGCTTATCC GTTGGAGGAC AATGGCCGTA AGATTCCAAC GGGGCGAATC 
    CGTAAAAAGA GCCGAGAGAC GGTCACTGAC AACGCCACGT GACAATACAG 
    ACAAAATCTT AAGGTTCTGG GACCTTATGG TCCACGTGTG ATGGAGTTGC 
    CGGGATACGA GGGTCGCATG GGCACGTGTG GACTGCCAGC TTGGCACTAT 
    TCCCCTCTTT ATTTATTTTT TATTTTTTAA TTGGAAGCCG TTGAGAAAGG 
    TACGGTGTAC CCACCGCTGC TTCTTTACCT CTTTTCTAAT TTTCCTATTT 
    TATTTTATAA TCTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4123842 [Map]; Strand: c
      • AT3G12920.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: -334; Region: promoter
    Flanking Genome Sequence: GT17472 - 5-prime edge 
    CCTACTTTCT CCCTGCATAA ATTAAAGACG AAGCAGAAAA GAGAAGAGTT 
    AGGCGAAAAA AGAGAGAAAT AGGAAGTTTA AAGTAAAAAA ACCAGAGAAA 
    GTAAAAGAGC AGATATAGAA ATTATGATTT TGACCGTAAC CTCTGAACCA 
    AAGATTTTAC AGCTGTCCTT GTCAAAGTTT TTTTTTGTTT AATTCTCTCA 
    TGAAGAAACG CTGGAAAAGG CAACTACTTT AATGGTCACT GGTCAGCCGG 
    ATATAACCGA AGAATCCTCA TGCTTAATTA AAATTATTAA AAAAATTGAT 
    AGTAGAAAAC AACAAAATGC CAATTACAGA AAAATAAATA AAATAAAACA 
    TCACATCTTC CTCTCTGTTC TCTATAAATT GGCAGACAAG AGTGTGTTGG 
    GTTCTGCTTT GATATTTGTT TTTTAGTTTC TCCTTCTCTC TGCAGAAACC 
    GTAATTAAAA ACCCCCACAA CTTCTTCAAC ATAACGTCTT CTTCTTCCAT 
    CTTTCGTTGC ATTCACGTTT TTAAAGGTTC TCTGAATCAC TCCATTAAAA 
    ATAGCTTTGA ACAAGTTTTC TCAATAGTCA ACAAAAACAA TGGCCGTTGA 
    AGCTCACCAT CTAAATCCTC TGTTCTCTTC CAACAGGTAC AGAAAATTTC 
    TTA

AT3G12920.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G79110.2); Has 1634 Blast hits to 1631 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 874; Fungi - 0; Plants - 566; Viruses - 36; Other Eukaryotes - 158 (source: NCBI BLink).
Link
InterPro Scan - TAIR