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GT17480

CSHL Arabidopsis genetrap mutant lines

Original: GT17480

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17480

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30111634 [Map]; Strand: c
      • AT1G80040.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -354; Region: promoter
      • AT1G80040.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -364; Region: promoter
      • AT1G80040.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -354; Region: promoter
      • AT1G80050.1 - [+] show detail - adenine phosphoribosyl transferase 2
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: GT17480 - 5-prime edge 
    GCCTTTTCTA TTCAACGATT ATGACAAATA ATGTAATCGG TTTAATCGAT 
    TTTGTAACTA AGGATTTGTT TGTTTTCTAT TGGCTCCATG TGGAATGATT 
    CATGCTAGTT ACTATGAAAT TCGGAATACG AAGGTATGCA GTATTATGCA 
    CCACTGTTCT TCAGATGAAT GAATTCAAGT CGATTTTCTA GTGATTTACA 
    TGGCAGAATT TATAAATAAT ATACATCATA TTGTTTGTTA GATAACTTTA 
    CTAAGGGGGC AAAAAAGGAA TTATCAGATA AACAAAATAT TTGAAAAAAG 
    AAAAAAACGT TGGCAGGGAG TTTCACGCGC AACGCAACGC GCCCATGTGA 
    TTAACAGAAG TACGAGAAAG CCCCTGCCGC TTAAAGATCT GTATATAAAA 
    AGGGTAAAAT AAGGTCTCCT GGCCTGGCCT TTAAGATAAA GAAAAGGAAA 
    CCCAATCGAA AACCTAAAAC CCGATTAGAT TTTCTTAGAT ACGAAACCTC 
    TCTTACGACG CTCCTTCCTC AATCTCTCTC GATCGTCGGA GATTCTTTCT 
    TCAAGAGTCA TCTTCT

AT1G80040.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80040.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80040.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1).
Link
InterPro Scan - TAIR

AT1G80050.1

Model type
Protein coding
Short Description
adenine phosphoribosyl transferase 2
Curator Summary
Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.
Computational Description
adenine phosphoribosyl transferase 2 (APT2); FUNCTIONS IN: phosphate transmembrane transporter activity, adenine phosphoribosyltransferase activity; INVOLVED IN: adenine salvage; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyltransferase 5 (TAIR:AT5G11160.1); Has 8411 Blast hits to 8411 proteins in 2474 species: Archae - 199; Bacteria - 5670; Metazoa - 171; Fungi - 181; Plants - 165; Viruses - 0; Other Eukaryotes - 2025 (source: NCBI BLink).
Link
InterPro Scan - TAIR