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GT17508

CSHL Arabidopsis genetrap mutant lines

Original: GT17508

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17508

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 480393 [Map]; Strand: c
      • AT2G02020.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon5 (CDS)
      • AT2G02020.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT17508 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGCTA 
    TGTACCGTGA CTCAAGTCGA AGAAGTTAAG ATTCTGTTAC GTTTGGTCCC 
    CATTTGGGCC TCAGGAATCA TCTTCTCAGT TCTCCATTCA CAGATTTACA 
    CTCTCTTTGT TCAACAAGGA CGGTGCATGA AACGAACCAT CGGCTTATTC 
    GAAATCCCTC CCGCAACTCT CGGGATGTTC GACACTGCAA GTGTTCTCAT 
    ATCTGTCCCA ATCTATGACC GCGTCATCGT TCCCTTAGTG AGACAGTTCA 
    CAGGCTTAGC TAAAGGATTC ACCGAGCTAC AAAGAATGGG GATTGGTCTT 
    TTTGTCTCTG TTTTGAGCTT GACATTTGCA GCTATCGTTG AGACGGTTCG 
    GTTACAGTTA GCTAGAGATC TTGATCTAGT GGAAAGTGGA GACATTGTTC 
    CATTAAACAT CTTTTGGCAA ATCCCTCAGT ACTTTTTAAT GGGCACTGCT 
    GGAGTTTTCT TCTTTGTTGG GAGGATTGAG TTTTTCTATG AGCAATCTCC 
    AGATTCAATG AGAAGCTTGT GTAGTGCTTG GGCTCTTCTC ACTACTACAC 
    TAGGAAACTA CTTGAGCTCG TTGATCATTA CCCTTGTGGC GTATTTGAGC 
    GAAAAAGATT GTTGGATTCC TTCAGACAAC ATTAACAATG GACATCTTGA 
    TTACTTCTTC TGGCTTTTGG TCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 480299 [Map]; Strand: c
      • AT2G02020.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron4 (CDS)
      • AT2G02020.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT17508 - 5-prime edge 
    ATGCATCTCC TTCTGATATA GTTGCGGCTT TGTCAAGAAA CCTGTACATT 
    GATATCAAAA ACCGTTTATT TAACCGTTAA TAGTCTAATG CTCAATTCAA 
    ACAAGAAATG AGAGGGAAAA AGATTTTCTT GTAACCGTCC GTGGAGTCTT 
    CAGGGACCTT GAGATTCGAT TTACGGTATG CGGCTACAAG AACTTGGCAG 
    ACGCTAGTAA TCGGGCTACC TCTCGGTTTC TGAAATCTAT AAAGCGGCGT 
    GCCAAAGAAG AAACTCATAG TAGCAAGTCC CATGAACACG GTAGGTATCA 
    AGAATCCTAA TTCCCATCCA TAATTCTCTT GAATCCAAAC TAGAACAGTA 
    GATGAAACAA AAGCACCAAT GTTGATAGTG AAGTAAAACC AGTTAAAGAA 
    AGAAGCTTTT CTGACTCGTT CGCTTGGATC GGTCTTATCA AACTGATCAG 
    CACCAAAGGA TGAGACACAT GGTTTGATTC CTCCAGTGCC AAGAGCGATA 
    AGGTAAAGCC CTGAAAATAA AACCGTAGAC TGAACCATTG TTGCTGGTGG 
    ACATAGAGAG CCAATGCATT CCGCTGGCTT AAGACCCGGA ACTGAAGCTG 
    AGAGTGTCAA TGCAACCATT CCCTTAAAAC AACATCAAAG AACAGAACAT 
    CAAGCCAAGA ACAGAACATA AAGCAAAGTT ATTTTTCAAG AAAATGCTTA 
    CGG

AT2G02020.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8051 Blast hits to 7680 proteins in 1472 species: Archae - 0; Bacteria - 4049; Metazoa - 790; Fungi - 469; Plants - 2161; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02020.2

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1).
Link
InterPro Scan - TAIR