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GT17512

CSHL Arabidopsis genetrap mutant lines

Original: GT17512

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17512

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 480396 [Map]; Strand: c
      • AT2G02020.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon5 (CDS)
      • AT2G02020.2 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT17512 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCTATGT 
    ACCGTGACTC AAGTCGAAGA AGTTAAGATT CTGTTACGTT TGGTCCCCAT 
    TTGGGCCTCA GGAATCATCT TCTCAGTTCT CCATTCACAG ATTTACACTC 
    TCTTTGTTCA ACAAGGACGG TGCATGAAAC GAACCATCGG CTTATTCGAA 
    ATCCCTCCCG CAACTCTCGG GATGTTCGAC ACTGCAAGTG TTCTCATATC 
    TGTCCCAATC TATGACCGCG TCATCGTTCC CTTAGTGAGA CAGTTCACAG 
    GCTTAGCTAA AGGATTCACC GAGCTACAAA GAATGGGGAT TGGTCTTTTT 
    GTCTCTGTTT TGAGCTTGAC ATTTGCAGCT ATCGTTGAGA CGGTTCGGTT 
    ACAGTTAGCT AGAAGATCTT GATCTAGTGG AAAGTGGAGA CATTGTTCCA 
    TTAAACATCT TTTGGCAAAT CCCTCAGTAC TTTTTAATGG GCACTGCTGG 
    AGTTTTCTTC TTTGTTGGGA GGATTGAGTT TTTCTATGAG CAATCTCCAG 
    ATTCAATGAG AAGCTTGTGT AGTGCTTGGG CTCTTCTCAC TACTACACTA 
    GGAAACTACT TGAGCTCGTT GATCATTACC CTTGTGGCGT ATTTGAGCGG 
    AAAAGATTGT TGGATTCCTT CAGACAACAT TAACAATGGA CATCTTGATT 
    ACTTCTTCTG GCTTTTGGTC AGTCTTGGAT CTGTTAACAT AC

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17512 - 5-prime edge 
    ATTCGGATTA AAGGGGGAAC ACATATAAAA GCCAAAAAAC CCTTGATTGT 
    AATTCTTTTT TCCCCCTTTC AAAAAAAAAA AAGGGGCTTC TTTTTTTTTT 
    TCAAGGGTTT TTTCCCCCTT TTCCGGGTTT TTCCCTTTTT TTGGCCTTTT 
    CCCCCTTTTC CCGGGGGTTT TTTC

AT2G02020.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8051 Blast hits to 7680 proteins in 1472 species: Archae - 0; Bacteria - 4049; Metazoa - 790; Fungi - 469; Plants - 2161; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02020.2

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1).
Link
InterPro Scan - TAIR