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GT17542

CSHL Arabidopsis genetrap mutant lines

Original: GT17542

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17542

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1048114 [Map]; Strand: c
      • AT4G02380.2 - [+] show detail - senescence-associated gene 21
        Distance: -1121; Region: intergenic
      • AT4G02390.1 - [+] show detail - poly(ADP-ribose) polymerase
        Distance: -1843; Region: intergenic
    Flanking Genome Sequence: GT17542 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAAACTTATT 
    TCTATCATAG CATTTTTGTT GGATTTCTCG AGATTAGTAT ATTTTTTAGT 
    TACTATCATT ACATAAGTAT ATTTTTAAAA ACCAATTATA TGAATTATGC 
    CGCTAACTAG ATAGATAATC GTATAACCAA TTCATCTCAC TCGA

AT4G02380.2

Model type
Protein coding
Short Description
senescence-associated gene 21
Curator Summary
Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses.
Computational Description
senescence-associated gene 21 (SAG21); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 3 (InterPro:IPR004926); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant 3 (LEA3) family protein (TAIR:AT1G02820.1); Has 166 Blast hits to 166 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02390.1

Model type
Protein coding
Short Description
poly(ADP-ribose) polymerase
Curator Summary
Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .
Computational Description
poly(ADP-ribose) polymerase (PP); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity, nucleic acid binding; INVOLVED IN: protein amino acid ADP-ribosylation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), WGR (InterPro:IPR008893), Poly(ADP-ribose) polymerase, regulatory domain (InterPro:IPR004102), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: poly(ADP-ribose) polymerase 2 (TAIR:AT2G31320.1); Has 1052 Blast hits to 1033 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 556; Fungi - 107; Plants - 166; Viruses - 5; Other Eukaryotes - 203 (source: NCBI BLink).
Link
InterPro Scan - TAIR