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GT17546

CSHL Arabidopsis genetrap mutant lines

Original: GT17546

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17546

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 644037 [Map]; Strand: w
      • AT2G02440.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bac...
        Distance: 4732; Region: intergenic
      • AT2G02450.1 - [+] show detail - NAC domain containing protein 35
        Distance: -4007; Region: intergenic
    Flanking Genome Sequence: GT17546 - 5-prime edge 
    CTTTCTCCCT GAAGAAAAAT AGTTACTGTT CTAGATATTT TCCGACTACG 
    TGAGACCAGG ACAAATATAG CCAATCACGA GGAAAAATAT AGTCTTATTA 
    ACATAGTCAT TGGTTCAACC AACAAAAGCT AAATATGAAT GATTTTATTG 
    GAAGTTAAAA ATGTCTCTTT TAACTACAAC ATTCTAGTAA GAGATTATCC 
    CAAAAAGAGA AAAGAAAAAA AAAAAGTTAA AAAAATTTTG TTGGGAAGGG 
    AACCCCAAAA AAACTTAAAA AGGTTGGCCA AAAACCCAAA AAAGGTTTAA 
    TTTGAAAAAG GAGTTTGGGG GTTACCAACA ATTCAAATTC CCAATTTTTT 
    TTCCCCCTAA AATTTAATTT TTTTAAGGCC CCCATTTTGA GAAAAAACAA 
    AAAAGGGTTG TGGGTAACCC AATCAAATTT CTTTTTTTTT AAAGTTTCCA 
    AAGTTTTAAA ATTAAATGCC CCCCAAAATG GAAAAAA

AT2G02440.1

Model type
Protein coding
Computational Description
unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02450.1

Model type
Protein coding
Short Description
NAC domain containing protein 35
Computational Description
LONG VEGETATIVE PHASE 1 (LOV1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 94 (TAIR:AT5G39820.1); Has 4817 Blast hits to 4369 proteins in 130 species: Archae - 0; Bacteria - 5; Metazoa - 115; Fungi - 57; Plants - 2924; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink).
Link
InterPro Scan - TAIR