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GT17565

CSHL Arabidopsis genetrap mutant lines

Original: GT17565

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17565

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2020290 [Map]; Strand: c
      • AT3G06520.1 - [+] show detail - agenet domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17565 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTGATGA 
    CGAGCGATCG ATTTTGGCGC GGCGGTGACC GCGTTGAGGT GGAACGACTA 
    GTTTCTGGCG CGACGGCATA TTTTCCGGCG AGTGTTGTTA GCGCGCCTTC 
    GGTGAGAAAG AAACTCGTTT GGGTGGAGCA TGAATCCCTA ACTGTTGGAG 
    GTTCCGTTTC CGTACGTATG AAGGAGTACG TCACTCCCAC GCGCCTCCGT 
    CCATCTCCAC CGCGTGAACT CAACAGACGG TTCAAAGCTG ACGATGAGGT 
    CGATGTCTTC AGAGATAGCG AAGGTTGCTG GGTTAGAGGC AATGTTACGA 
    CCGTACTTGA AGATTCAAGG TACATTGTGG AGTTTAAAGG GGAAAATCGT 
    CCAGAAATAG AGGTTGATCA GTTCAATTTG AGGCTTCATC GTGAATGGCT 
    AGATGGTGGG TGGGTTCCTT CTCTTCTCCA ACAGGTAAAA CATTTCTCTG 
    CGTTTGAATT GAATCTAGGG TTTGTAGAAA AATAGTGAAT TTAATGTTTT 
    AGGGATTAAG ATACATTGAA AGATTTGACG AATTAATTGT AAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2020232 [Map]; Strand: c
      • AT3G06520.1 - [+] show detail - agenet domain-containing protein
        Distance: -52; Region: promoter
    Flanking Genome Sequence: GT17565 - 5-prime edge 
    CCTACTTTCT CCCTGGTCAT CAGTAAACAA TTTGTGCAAC CCAACGAGAA 
    AATAGGGATA GGAGTAAGAC TGAAGATGAT GAAATTTCCA GAGACCTTGA 
    TTCAACAGAA GAAAATCAGA GAAGAGTGAG AGCTATTATA TATAGAGAAA 
    GAGACAGTGG CGACACAAGC ATGCTTATAT TATGAGTCGG TCAAGATAGG 
    TCAATGCCGA AAAAAGGAAA ACACCAAAAC AGCACCTCGT TTCTAATTTA 
    TGTAATACAA CGTCCTGTTG TTTTTCTTTA TC

AT3G06520.1

Model type
Protein coding
Short Description
agenet domain-containing protein
Computational Description
agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 523 Blast hits to 271 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR