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GT17570

CSHL Arabidopsis genetrap mutant lines

Original: GT17570

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17570

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 7007894 [Map]; Strand: w
      • AT3G20070.1 - [+] show detail - titan9
        Distance: -976; Region: promoter
      • AT3G20070.2 - [+] show detail - titan9
        Distance: -998; Region: promoter
      • AT3G20080.3 - [+] show detail - cytochrome P450, family 705, subfamily A, polypeptide 15
        Distance: 0; Region: exon1 (5UTR)
      • AT3G20080.1 - [+] show detail - cytochrome P450, family 705, subfamily A, polypeptide 15
        Distance: -880; Region: promoter
      • AT3G20080.2 - [+] show detail - cytochrome P450, family 705, subfamily A, polypeptide 15
        Distance: -905; Region: promoter
    Flanking Genome Sequence: GT17570 - 5-prime edge 
    CCTACTTTCT CCCTGGGTTT CATTGTTCAC TGACTTCACT GACTTCATTC 
    ACTTCAAATC TTGTGTTTAT GATCTTAAAA ATGCAGCGGT TTTTAAGGTT 
    GATTTTGTTT TCTCCGATTC GATTCTCTGT ATAATGCGAT CCCACTCATA 
    TGTGACTAAT TGGGTTTTTG CCCATATAAA GGAAGCAAAA TTCAGGTGAT 
    GAAGGAAAAA GATGAAGATG TCGGCTTTGA AGTGAAGAAA TTGGAGATTT 
    AACAAATTCA GAAGTTTGAG GGAAATTTAC AGCATTGGAA TCCCTCTAGA 
    CACTGCTGGT TAGGATTGGG AATGGAGGAA TTAACAGCTG CAAGATCAAG 
    AAATCCCCTA AGCAGCTGAA TCGTGTGACC AGAAAGGGGC TGATTGTTGT 
    GAATTGTGAT CGTCTGCTTT TCTTTTACTT GAGATTCTTG AATCTGATTT 
    CTGATAGCGT TCGAGCGAGA GAGAGATTTT CATGTCTCGG AAGCTGATTT 
    CTACAAGAGT TTATGGTCAA GACATGGACT TCCCAACATC ACTTATTTTG 
    CTTGGCCGGA CACAAGAAGG TGGGTTGGGA TTTAGAGTTA GACCACTTTG 
    ACATGTTTAC TTCTTTGAGA TTGAGCTACC CTATTTTGGT ATGTCTTGCA 
    ACTCCTCCAT TATTCTTGTT TGTTCCAATG TTTTGGTCTC TTAATCCTAT 
    CCTAGGAAAT TTGCTGTAC

AT3G20070.1

Model type
Protein coding
Short Description
titan9
Curator Summary
Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.
Computational Description
TITAN9 (TTN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy, endosperm development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 250 Blast hits to 217 proteins in 63 species: Archae - 0; Bacteria - 52; Metazoa - 53; Fungi - 8; Plants - 43; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20070.2

Model type
Protein coding
Short Description
titan9
Curator Summary
Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information.
Computational Description
TITAN9 (TTN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy, endosperm development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20080.1

Model type
Protein coding
Short Description
cytochrome P450, family 705, subfamily A, polypeptide 15
Curator Summary
member of CYP705A
Computational Description
"cytochrome P450, family 705, subfamily A, polypeptide 15" (CYP705A15); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 4 (TAIR:AT4G15380.1); Has 32700 Blast hits to 32491 proteins in 1676 species: Archae - 51; Bacteria - 3683; Metazoa - 11407; Fungi - 7150; Plants - 9260; Viruses - 6; Other Eukaryotes - 1143 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20080.2

Model type
Protein coding
Short Description
cytochrome P450, family 705, subfamily A, polypeptide 15
Curator Summary
member of CYP705A
Computational Description
"cytochrome P450, family 705, subfamily A, polypeptide 15" (CYP705A15); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 4 (TAIR:AT4G15380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20080.3

Model type
Protein coding
Short Description
cytochrome P450, family 705, subfamily A, polypeptide 15
Curator Summary
member of CYP705A
Computational Description
"cytochrome P450, family 705, subfamily A, polypeptide 15" (CYP705A15); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 705, subfamily A, polypeptide 4 (TAIR:AT4G15380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR