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GT17579

CSHL Arabidopsis genetrap mutant lines

Original: GT17579

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17579

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17558523 [Map]; Strand: c
      • AT1G47710.1 - [+] show detail - Serine protease inhibitor (SERPIN) family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17579 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACG 
    GTAGTGCTAA CGGTGGTCCT AAGCTCTCGG TGGCTAATGG CGCCTGGATC 
    GATAAGTCTC TCTCCTTTAA ACCTTCCTTT AAACAGCTCT TGGAAGATTC 
    GTATAAAGCT GCTTCGAATC AAGCTGATTT TCAATCGAAG GTGAGTTTTC 
    TGATTTGATT ACTTGGTTCT GTGATCTAGA CTTAGTTCTT CAGGTACAGA 
    GGAACTTTGT GTGGATTGTA ATAGAATCAC TCTTAGGCCA AAATGTGGAA 
    TTTTTGTTTC TGAATTTTAC ACTTGAGGAT CTGTATATGA TCGTATTAGG 
    GTGGCTTGTG ATTTGATTCT ACAGAAATCT TGCTCTCGAA TTCGTTTTAT 
    TGATTGCAAT ATGATTACTA CATTTTGATT CTGCTTCCTA GGGTGTTGTA 
    AATACTAACT TTGTGTGGAT TTTAGTAGAC ACAATCAAAG GCCAAAATGT 
    GGATTTGTTG TTTTCATTAT GTTACCCGAC CGGATCGTAT CGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4525304 [Map]; Strand: c
      • AT2G11345.1 - [+] show detail - transposable element gene
        Distance: -2007; Region: intergenic
      • AT2G11350.1 - [+] show detail - transposable element gene
        Distance: -1676; Region: intergenic
    Flanking Genome Sequence: GT17579 - 5-prime edge 
    CCTACTTTCT CCCTGCGCCT ATGTGATTCC GGACGGAAGC TATGTAGAGA 
    AGGAGGCTCT GTTTTGGTTT AGCAAAACAG AGTACTTAAA AGATGAAGAT 
    GGGAGTGAAT GAACGAATGA ATATGAAAGG GGATAGGGTT GAATTCGGTT 
    CTAGGAATCA CATATCATCT CAGGATGAAA AGAGAATTTG CTCCATACCA 
    TCTTAGGAAT CCGTCTGAAA CTACCCCATA CTCGTGCTAC ATTTGCTTGT 
    GTTTTTATCT TCGTGCTACA TTTTATTAGA TTTTCATNTT TCCACTCGAC 
    GAAAGNNNCG NAANANTCTA ATGACATGGA TTATATTTTC TGGGTTAAAT 
    CATACTTTAA GTCTTGAAAT TAGAAACTAA ATAAATTAAT AGTTCATTCG 
    CTTATAATAA ATACGTTAAT TACATTGGTA ATTCATACCT ACATATTGGA 
    CATATATGAC TAGTCTGTAG CCATTTTACA ATACATGTGT AATCAAACCT 
    ATGACCACGA CTTAATTTGA CTACTTTTGT TCCGAAATAA AAATGTGACA 
    AACAAATAAC GCATTGCGCG TTCTTACAAT TGTTAGTATT ACACTAACAT 
    TTTGTATAAA TATGATCAAA GACTTGATTG CACCATTAC

AT1G47710.1

Model type
Protein coding
Short Description
Serine protease inhibitor (SERPIN) family protein
Computational Description
Serine protease inhibitor (SERPIN) family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT3G45220.1); Has 6643 Blast hits to 6565 proteins in 500 species: Archae - 66; Bacteria - 387; Metazoa - 5142; Fungi - 12; Plants - 353; Viruses - 463; Other Eukaryotes - 220 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G11345.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)
Link
InterPro Scan - TAIR

AT2G11350.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 9.4e-56 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR