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GT17600

CSHL Arabidopsis genetrap mutant lines

Original: GT17600

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17600

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16379553 [Map]; Strand: w
      • AT2G39220.1 - [+] show detail - PATATIN-like protein 6
        Distance: -2533; Region: intergenic
      • AT2G39230.1 - [+] show detail - LATERAL ORGAN JUNCTION
        Distance: -2094; Region: intergenic
    Flanking Genome Sequence: GT17600 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGC 
    CTATAGTGGC TTTAGTTCCT CCTTGACATT CCCAGCTGTG GATATATATT 
    AACCCATGGA TGGGAGATTA AATGGTGATA TAGTTTACCA CTAAACTAGA 
    AGACAACAGA GAAAGATGCC GATTTGGAGT TGGCGACAAA CATAGATAAC 
    TAAATGGCTC TCAAAGAAAA AGAGAGAAGA AAATCGGATA AGGCCAATAA 
    TATATAAAGT GGGGATGGGA ATAAACATTT TTATATTTGG CTTCTATTCC 
    CTTCCTCGTC ACCTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16380951 [Map]; Strand: w
      • AT2G39230.1 - [+] show detail - LATERAL ORGAN JUNCTION
        Distance: -696; Region: promoter
    Flanking Genome Sequence: GT17600 - 5-prime edge 
    TTTATCCCTG CTATAGGCTA TCAAATCTTT TATACCTAAA ATGTTTTCTT 
    AATAATACCT AAATGTTTTA CATGGAATAT TATGTAATTC TGCAGTGATA 
    TAACAAGACC AAGAGTCAAT TTTGGGTATT ATTATGACTC TCTATGTAAA 
    AGTAAACCGA TCCCGACCAG AATCGACAAC TCTGAAACCG AAAAGAAGTA 
    ACATACCTAG TGGAGATATA TAAGAAAATA AAAAAGATGG CACATAAAAC 
    GCCAACACAG TAATAAGACA TGTATACCAC TATTATCCAT AAAGCTTTTG 
    GCCATTGACC GATTTATCTT CACCGTCCTC ATGTAATATC CAATCTAAAG 
    TATGAATGAA ATACTATTTT TTTCACCTTT TTATGTTTTG CTTGGCTTTT 
    TCCATGATTT GGTCTTTGAT TTATCATCTT CTTTAGTGGG AGTTGAATTT 
    ATACTGTTGT GTCAATGTAT CAGTCATTTA TGCTATTATA CTGTTACAAA 
    AACACATTTA ATAATAGTAA CAAATTTATT TTGTTAACTG TACTGTTACA 
    GTGTACACAT GAGAAATTGA GAATGCATCG ACATCAAGTA GCGAAAGAAA 
    AGTAAACGAA AACGACGCAG TTTTGGTGCC GAGACTTTTT AGACTACAGG 
    GTTTAAGGCT GAACTAAATG ACGCCGTTTA GAGAAGGGTT TTA

AT2G39220.1

Model type
Protein coding
Short Description
PATATIN-like protein 6
Computational Description
PATATIN-like protein 6 (PLP6); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-like protein 6 (TAIR:AT3G54950.1); Has 1294 Blast hits to 1292 proteins in 232 species: Archae - 0; Bacteria - 327; Metazoa - 139; Fungi - 43; Plants - 635; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39230.1

Model type
Protein coding
Short Description
LATERAL ORGAN JUNCTION
Curator Summary
Encodes a pentatricopeptide protein (LOJ) that is specifically expressed in lateral organ junctions.
Computational Description
LATERAL ORGAN JUNCTION (LOJ); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G54980.1); Has 63662 Blast hits to 14403 proteins in 306 species: Archae - 7; Bacteria - 57; Metazoa - 980; Fungi - 1296; Plants - 59204; Viruses - 0; Other Eukaryotes - 2118 (source: NCBI BLink).
Link
InterPro Scan - TAIR