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GT17607

CSHL Arabidopsis genetrap mutant lines

Original: GT17607

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17607

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22548904 [Map]; Strand: c
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G60965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT17607 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATC 
    TTCAAGAGGT GACAAAGACT CCCCATGTCG ACTAGTAGTC ACTGGGTTTG 
    TAATCATGTG ATCATCTTCA CTCGCAAGAG TACTTGAAGG GTAAGGGAAA 
    GAATCTTCGT GAAAGATAAC ATCACGGGAC ACAAACGTCT TCTCAGTTTG 
    CAAGTCCATT ACTAGCCATC CTTTCTTCCA AATGGATATC CGAGGAAAAC 
    ACATCGAGCA CTGCGATGTC AAACTTATCA TTCGAACGTC GTACTAACTT 
    TGCATAGCAT AGACATCCAA ACGTCTTTAT GTCATCGTAT GAAGGAGACT 
    TTTGAAACAA AACTTCATAT GGTGTCTTCC CTTTGAGTAG AATCGATGGC 
    GTTCTATTAA TCAAATGAGT GGCCGCTTGA ATGCTTTCAC CCCAAAAACG 
    AGTTGGTAGT TGAGCTTGAA ATAAAAGCGC TCGAGCAACG TTTAGTATGT 
    GTCGATGCTT TCTTTCAACT CTACCGTTTT GTTGAGGTGT ATCTACACAT 
    GAGGTTTGGT GCGTGATACC ATTTTCTGCA AAATAGGAGC GCATACACAT 
    GAATTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22548840 [Map]; Strand: c
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G60965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT17607 - 5-prime edge 
    TCCCTGTTGA GATCAACCAA TCGATCTAGA TACAGACTAG TCGATTCAGA 
    CACAGGACCG ATCGATCCTG ATACACGACA GATCGATCCA AGCTCTGCAG 
    AAGTCACAGA CACGACCCGA TCGATCGATC CAGAGTCCAG ATCGATCGAT 
    CCAACACTTC TGCCCGATGA CGTAGAAATC CTAAACACGA CGCGATCGAT 
    CGATCCAGTT ACACAGTTAG TCGAAACAGA AACATTAAAC ACTGATCGAT 
    CGAACGATCC GGTGACTCGA TCGATCGATC CTGTTAAACC AACAGCATCA 
    TCTTCAAAGG AAAAGAAGGT CGTTCAAACA GAAACTGAGA CTCGTACTGA 
    GACTGAAATA GAAGAACTTG GGGTTGGCAA ATGAAAGAAG ATGAGGTCCG 
    TACTACTAGA GCCATACGTC ACTTATTCGG GAACGCAACT TGATAACCCC 
    CCTCATGCT

AT3G60961.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60965.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.8e-146 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)
Link
InterPro Scan - TAIR