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GT17673

CSHL Arabidopsis genetrap mutant lines

Original: GT17673

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17673

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 303120 [Map]; Strand: c
      • AT4G00730.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: exon4 (CDS)
      • AT4G00730.2 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT17673 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCAGACACGA TCAAGCTCGT 
    CTTTTAAACG AGCGTTTTCG ATACGGAGAT GATGTTCTTC AAGAGAGACA 
    TCACCAAGCA TGGCAGGTCC ACCACAATTG GTGCAGATTG GATTCCTCAT 
    TGCTTCACGA ATAGACATGT TCTCAGCTCT TAACTTATCG TTCTCTTGTC 
    TCAATAACGC GTTCTCATGC CTCTCTAATT GAGTCTGCGC CACAATATGA 
    TTTTATTACA AAAGAATTCA TTTTTTGGGA TTAAAGATGT GATTTAATCT 
    CCACATACCT CTTTNNNNNT TGTGAAACAA AANNNTGGAA CCAGAACTTG 
    ACTTGTCTTG TCTCTAAGCA AAGTCTCTTA CTTAGTTCTA ATCTTTGTTT 
    CTCGTCTGGA TGCGGACACT CTTTGAACAT ACTGAAAGCA AAAACTCAGA 
    TTCATTAGAT CGAATAAAAG AGATGATGGT AATAACAATA TGGATATTGG 
    ATCGAAAGGT ATAATTACGA TTCGAGTTCT TGGATTTGTT GAGGAGTGTG 
    TCGGTGATAA CGTTTCTTCC GAGGAGGCTT ATCAGCAGCG TCTTGATCTT 
    CACCGGAGAT ACCTTCAACG TTATCACTAC CAGATCTACT CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 335272 [Map]; Strand: w
      • AT2G01770.1 - [+] show detail - vacuolar iron transporter 1
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT17673 - 5-prime edge 
    TAATTTGTTG TTTTCTGTTT GTTACTATTC ACGTACTTTA TTTGTTGCAA 
    CAAAAAAGAT TAAAATTGGA AGTCGGACCA TATAAGAATC TTGCCCACAC 
    CTGGAAAGTA TAAGCTCAGC TTTTGCAGAA ATCTAAAAGT ATCCCTCGAT 
    TTTCTCGTTT AATTAAGCAC TATATAATAT ACA

AT2G01770.1

Model type
Protein coding
Short Description
vacuolar iron transporter 1
Curator Summary
Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane.
Computational Description
vacuolar iron transporter 1 (VIT1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); Has 1947 Blast hits to 1945 proteins in 688 species: Archae - 106; Bacteria - 1196; Metazoa - 0; Fungi - 163; Plants - 191; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00730.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 12660 Blast hits to 12608 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9962; Fungi - 223; Plants - 2228; Viruses - 1; Other Eukaryotes - 246 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00730.2

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR