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GT17769

CSHL Arabidopsis genetrap mutant lines

Original: GT17769

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17769

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17705316 [Map]; Strand: c
      • AT3G47960.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4483; Region: intergenic
      • AT3G47965.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: 2602; Region: intergenic
    Flanking Genome Sequence: GT17769 - 3-prime edge 
    CGGGTAGAGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTCGT 
    GTAGCAAACA AAAACAAGTT GCCTTTTTCA TTATTGGGCC GGCAAGTGCT 
    ACATGCACTC TCCGCGTACA ATTACGTTCT TAATTCTCAC GTTTTTATTT 
    GTTGCAAAGT TAAATATTTG TTTGTTGCAA ATATAACTGT ATTATATAGT 
    CCATAAAATT TGTATATAAT ATTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17705245 [Map]; Strand: c
      • AT3G47960.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -4412; Region: intergenic
      • AT3G47965.1 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: 2673; Region: intergenic
    Flanking Genome Sequence: GT17769 - 5-prime edge 
    TACACGACCT CGTAAAGTAA GGTTGAGCTA TATTTTTATT CATTTATACA 
    TACAAAAGCG ATATTGAAAT CGAATGGCTC ATATTTATGA TGTGAACATG 
    GAAAGTCAAT TATATGTAAA CTATAAGTCA AGTGTTGGAC CAAATTTAGT 
    GTTGTAGTCC AATTCAACAA TGAAAATTAA ACCGCCAAAA AAACACAAAC 
    ATCCAATATA ACGAATAGAC ACGTAGTTAA GACTTTAAAT ATCTTAAGAG 
    ATTAGACAAA AACCATACAG TTCCATTCCA TTGAGATTTT CTTCATTCAG 
    AATTTGACAC CAAGTTTATA AATGTTTAAA ATGTTAATAT ATAAAGTAAA 
    TTTCTC

AT3G47960.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1); Has 3941 Blast hits to 3750 proteins in 534 species: Archae - 0; Bacteria - 697; Metazoa - 584; Fungi - 378; Plants - 2186; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G47965.1

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR