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GT17777

CSHL Arabidopsis genetrap mutant lines

Original: GT17777

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17777

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4787352 [Map]; Strand: w
      • AT5G14800.1 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: 0; Region: intron1 (CDS)
      • AT5G14800.2 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17777 - 5-prime edge 
    TATATACCAA CTTGAGGTTT CACAGAGAAT ATGACAACAT CGCTTTCTTT 
    AACAACCTGT CATTTTTTTG AAGATCGTCA ATCTCAATTT AGTTCATCTC 
    ACTCGCACCA GACCGAAGAT ATTGAAAAAG AACTTACTTC TTCGCTAGTG 
    GAGAAGACAT TGACGCCAAA GGATTCGAAG ACATCACGGC GATTGAGATT 
    TGAGTGAACG GCGGTGCATA TACGATTAGG AGGAAGCACA CCGGAAGCAA 
    CCACACCTCT AGCTATACTC TCCGCCATTT TACCAGCTCC GATGAATCCT 
    ACCTTGAAAC TCTCCGCCGG AATCGGAAGA ATCTCCATCG GGAAAATTTA 
    ACGGGGCGGC TGGCGAGATA CTTCGGACGG GTGAGCTGAC AAGCTGCTTG 
    AGACGGGCGA GCTGATG

AT5G14800.1

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); FUNCTIONS IN: pyrroline-5-carboxylate reductase activity; INVOLVED IN: response to salt stress, response to heat, proline biosynthetic process; LOCATED IN: cell wall, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7885 Blast hits to 7882 proteins in 2434 species: Archae - 115; Bacteria - 5234; Metazoa - 373; Fungi - 241; Plants - 70; Viruses - 0; Other Eukaryotes - 1852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14800.2

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7429 Blast hits to 7426 proteins in 2378 species: Archae - 102; Bacteria - 5104; Metazoa - 368; Fungi - 229; Plants - 70; Viruses - 0; Other Eukaryotes - 1556 (source: NCBI BLink).
Link
InterPro Scan - TAIR