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GT17798

CSHL Arabidopsis genetrap mutant lines

Original: GT17798

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17798

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28323367 [Map]; Strand: w
      • AT1G75450.2 - [+] show detail - cytokinin oxidase 5
        Distance: -4992; Region: intergenic
      • AT1G75460.1 - [+] show detail - ATP-dependent protease La (LON) domain protein
        Distance: -4519; Region: intergenic
    Flanking Genome Sequence: GT17798 - 3-prime edge 
    TAAATCATGT ATGGGACACT TTTTGCATGG GAAAAGTGGA TATGTTTGGT 
    TCATGACCAA AAAAACTCAC AAGTGACAGT TGTGTGTAAC GTCCACTAAT 
    CAACTTAAAC TTGACATTAC AACATACTGT CCATTCAAAT ATTATAACGA 
    ATTATAATAA ATATATGCAC AAAATTTTCC TAACCACTTA TATGGCTGAA 
    AGACTGATTC TAAAAATATG GTTTCGAACT CAAAAAGGAA CCCACCATAT 
    GCCATGATAA AGATATACAT ACTCATTTCA AACCAAAGGA ATAATTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28465031 [Map]; Strand: c
      • AT1G75820.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17798 - 5-prime edge 
    CGGCGGTATT CCAGATTCAA TCTCTCGCTG CTCAACTTTA ATCTCCGTCG 
    ATCTCAGCCG TGACCGAATC TACGGAGAAA TCCCTCAAGG GATCAACAAC 
    GTGAAAAACT TAGGAACTCT T

AT1G75450.2

Model type
Protein coding
Short Description
cytokinin oxidase 5
Curator Summary
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1).
Link
InterPro Scan - TAIR

AT1G75460.1

Model type
Protein coding
Short Description
ATP-dependent protease La (LON) domain protein
Computational Description
ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G19740.1); Has 3715 Blast hits to 3715 proteins in 882 species: Archae - 0; Bacteria - 1742; Metazoa - 186; Fungi - 45; Plants - 112; Viruses - 0; Other Eukaryotes - 1630 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75820.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain.
Computational Description
CLAVATA 1 (CLV1); CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G65700.2); Has 209359 Blast hits to 134993 proteins in 4611 species: Archae - 138; Bacteria - 19949; Metazoa - 62202; Fungi - 10385; Plants - 91018; Viruses - 406; Other Eukaryotes - 25261 (source: NCBI BLink).
Link
InterPro Scan - TAIR