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GT17855

CSHL Arabidopsis genetrap mutant lines

Original: GT17855

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17855

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9915240 [Map]; Strand: w
      • AT1G28310.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: -1403; Region: intergenic
      • AT1G28320.1 - [+] show detail - protease-related
        Distance: 5267; Region: intergenic
    Flanking Genome Sequence: GT17855 - 5-prime edge 
    TTTCTCCCTG GATATAGATA GTTTGTTGTA CGATCCAACA AAACAGTTTT 
    AAAGATGAAA ACATTTCTTA ACGACAAAAA AGAGTACGCA AGCAAGCAAA 
    TTAGGTTATT AAATGTTTAA ATATGTCACA TCACATTTTC CGGACTCATG 
    TTTTACCATC GGTATTTAGA TAATAGGTCT AAAGTCTCAA AAATGTCAAA 
    AAAAGCTTGA ACTTTCAAAT TTGGGATGGA AAAGGCATGA ACTTTGAAAA 
    TGTCATATTA ATTATGAAGT TTTGGTTGAC TTCTCAAAAA ATAGCTAACT 
    TTCGTTGACT GGTCCGTCAA AGGCTTGCCG TTAAATTTTC GTTAACAGAA 
    TAATAATAGA GTTATCACTC CGTTAGAAAT TTAAAACGAC GTCGTTTTAA 
    ATTTTAAAAT TAAACAGAAA AAATGAACCT TGCCAAAATT CGAACCGCTA 
    CCATGAGAAA CTCATTACGA GATTATAAAC CATTGACCCA AAATTACATT 
    TTGTCAAAGT GACAAACACT AATGTATATA TATACTCAAC AATTCGTCTT 
    C

AT1G28310.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Computational Description
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: OBF-binding protein 3 (TAIR:AT3G55370.2); Has 1299 Blast hits to 1242 proteins in 95 species: Archae - 0; Bacteria - 24; Metazoa - 66; Fungi - 20; Plants - 1091; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28320.1

Model type
Protein coding
Short Description
protease-related
Curator Summary
Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.
Computational Description
DEG15; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 3917 Blast hits to 3716 proteins in 1340 species: Archae - 34; Bacteria - 3021; Metazoa - 72; Fungi - 16; Plants - 139; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).
Link
InterPro Scan - TAIR