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GT17867

CSHL Arabidopsis genetrap mutant lines

Original: GT17867

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17867

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1028386 [Map]; Strand: c
      • AT2G03380.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17867 - 5-prime edge
    CTTTCTCCCT GCTTAGAAGG AGAAAGACGG GCTCGAAGCG GCGTAATGCA 
    GAGAAGACCC ATCATTCTCT TCAGTTAAAA TCAATTCTTT GATTGTCGTA
    AACGAGACGC ATCTCTGCGG AAACCCGAAT CTTCTAGTCG GAGAAAGAGT
    GATTGAGCGT AGCATTGATC TTCTTCGCCG TTCACAACTT ACCGGCGGCG
    TGGCTTTCCC GCCCGATTAT TGGTCTCAGC GTTTTGTAAC GAAAAATATT
    CATGGGCCTT AAATGGGCTT ATAAAGATCT AAAGCCCGTT AATGTGTTCA
    TAATTATAAC AAAAAAATCA CAAATTTGAT CTCCAAAAAT ATCGTAAATC
    GTAATCAAGA TTTTATAGTT TAATCATGTT GAGCTGGAGA AAAAAATCAT
    GGCATAACAA AAATCAATTC TATAAAAAAC TATATCTTTT GTTTGTTTTT
    CTGGTTTTGT CTCTTTCACT ATTTAATATT AGATAAATTA TAATATGTCA
    AAACAACAAA AAAAAAGAGT AAATAACTCC AATTGTCAAT TGAAATCAAT
    TATTAATTAA CTGTTATATT TGTAATTGGA TAGAACTTAG AATTAAGAAG
    TTACTTTTCT TACAGAATAA GCGTCGATAG TAAGACGACG TATCATTTTT
    TACATAGAAC TGTGAAAATG GTCTCTTTTT TTTGCTAAAA ATGTTAA

AT2G03380.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46134 Blast hits to 13811 proteins in 252 species: Archae - 0; Bacteria - 9; Metazoa - 175; Fungi - 164; Plants - 45093; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).
Link
InterPro Scan - TAIR