1. Home
  2. Mutant Lines
  3. GT17891

GT17891

CSHL Arabidopsis genetrap mutant lines

Original: GT17891

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17891

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11412 [Map]; Strand: w
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -957; Region: promoter
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: GT17891 - 3-prime edge 
    ATCCCTACTC TTGGGGATGT CTAGGATTTT GAACCGAATT CAAGTTTGAG 
    GCTAGATAAT ATTTTTATGC GTAAACATGA AACAGAGACA TGGAGAATGC 
    ATATATCATG AAGCATCAAG TATACAATAG AGGCAATCAT GGATCAAACG 
    GTGTTTATGG TATCAGTAAG ACAGCGGAGA ATGCAACCGG GACCAACTCT 
    CTCTCTGAGT TTCCCCGAGC CATCAAGGCT ACAAACATCT CGACTACAAG 
    GGCCAATCAA ATTACATAAT CACGGAAAAA ACAAGGATAG ATACAAGCAA 
    ACCTAACACT CGAGCAATAA TTTGAGTAAT AGAAACAAGA AACCAGAAAT 
    CGAAACGAAA CGGAACGAAA CACAAAATTT CCTAATTAAT CTTGTGTTTA 
    ATTAAGAAAA GAAAACACAA AAAAGTTGAA AGGTTTAGTG GTGCATCCAC 
    GTAGCAAGAC ATTTTAGGTG TACGTCGACC ATATTGTTGG CCGTTTATAG 
    AGCATCATCC ACTCTCCTCG ACGAGCAAGA TCATGCCGCC TCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11510 [Map]; Strand: w
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: GT17891 - 5-prime edge 
    CTTTCTCCCT GCCCAAGAGG ACATAAACAC AGTTTAGACT TGTTTTTCAA 
    TTAGCAAACA GTTGCTTGAT AAGAAGTCAT TCCTACAGCT CATGTGTACC 
    ACAATTCTCT CTCTTTTCTC CAACACCCCA ACTAAAACAA TCTAAGCCGT 
    TTCTGAATGT TTTCCGGATC TGCTGAGTCA TAAATACGAG TGCTTTAGGC 
    AGGCAAATAA GACTCCAGCA TCAATTTGGC TGGGGAAGGT GTTAAAATCT 
    CAACGATCAG GTACGTGTAT TTCCATTCCT TCTCTGCCTT GTCTTTAAAC 
    ATCTCCGTGT ACACTTTCCC TGCTCCTTGA GGCCCACGGA TGTAGAAGTT 
    TACCTGAAGC ATATTCAATT TTGATCATGT TAAACCTGCA AAACTCTAGA 
    CAATTTATAT AGCAAGAATG TGAATCCAAG CGCAATAGAG GTTCTACAAT 
    GAAATACCTC AACATGCTCC ACTCCGTC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR