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GT17914

CSHL Arabidopsis genetrap mutant lines

Original: GT17914

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17914

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16061691 [Map]; Strand: c
      • AT2G38325.1 - [+] show detail - MIR390A; miRNA
        Distance: -263; Region: promoter
    Flanking Genome Sequence: GT17914 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACT 
    AAAAAAGCTA AGAAATTTAA TAAATACATT ATTATAGGGG GAAAAAAAAG
    GTAGTCATCA GATATATATT TTGGTAAGAA AATATAGAAA TGAATAATTT
    CACGTTTAAC GAAGAGGAGA TGACGTGTGT TCCTTCGAAC CCGAGTTTTG
    TTCGTCTATA AATAGCACCT TCTCTTCTCC TTCTTCCCCA CTGACAACTT
    TTTAGCTTCA CTATCTCTCT ATAATCGGTT TTATCTTTCT CTAAGTCACA
    ACCCAAAAAA ACAAAGTAGA GAAGAATCTG TAAAGCTCAG GAGGGATAGC
    GCCATGATGA TCACATTCGT TATCTATTTT TTGGCGCTAT CCATCCTGAG
    TTTCATTGGC TCTTCTTACT ACAATGAAAA AGGCCGAGGC AAAACGCCTA
    AAATCACTTG AGAATCAATT CTTTTTACTG TCCATTTAAG CTATCTTTTA
    TAAACGGGCC TTATTTTCTA TCCCTTTTGT TTAAACTAAG AAACTATAGT
    ATTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16061638 [Map]; Strand: c
      • AT2G38325.1 - [+] show detail - MIR390A; miRNA
        Distance: -316; Region: promoter
    Flanking Genome Sequence: GT17914 - 5-prime edge
    CCTACTTTCT CCCTGTTTTT TAGTGTGGAA AGTATTGATA CTATATAGTC 
    CAGATGTGAT TTATTGGATC CCGTTGATTG TTTGACTTTA GTTTCTTCTT
    CTGAGGCCTT TTGATTCACA GAAATGAAGG AAGCTTAATT CAAAATACAT
    GATAATGCTT TTGTTGACGA ACAATTATAG ATGCATCTAT TATAATATAT
    GCTATCATTT TAACCCGGAC TTTAATTACG TATATGTATA TATACACACA
    TTGCATATCC TATTGTGATT TAAATAAATA TGTATTTATA TACCACATAT
    TATTAATTAT ATACCATTGG TCCGATATTC AAAATATTCG AAGACCAATG
    CTTTTTTTTT TGCCGGCCAA AAACCAAGGT TAATTTGCAA ACTATGAAAC
    TCCACAAAAA ATTTCCGGGG ATTTAAAAGA ATAATTTTAT ATAATTTGGT
    ACCCCGAAAA AAATGGATTT CTAAAATTCC CCTTCCCCAA ACCGGAAAAT
    TTATTTATTT AACCAAAGTT TTTTTTCCCC AACCAAAATT ATATTTTTAG
    GGGAAAATAA AAACCTAAAG GCCCAAAGGA CCATTTCTAC CCCAAAAAGG
    AAAATCCGGG AAAATACCGG GAAAGTTGGT TTTTCCCATA TTTGTAACCA
    GAAAAGGATT AACCTATGGA TTGCCAAAAC TTTTAAGTCC TAACTTAACC
    TTTTAAAAGG GTGGTTGGGG CCATTTCC

AT2G38325.1

Model type
miRNA
Short Description
MIR390A; miRNA
Curator Summary
Encodes a microRNA that targets the TAS3 family of tasiRNA-generating transcripts. Cleavage of TAS3 transcripts by miR390 initiates processing of these transcripts in a 21-nucleotide register. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: AAGCUCAGGAGGGAUAGCGCC
Link
InterPro Scan - TAIR