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GT17915

CSHL Arabidopsis genetrap mutant lines

Original: GT17915

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17915

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 153987 [Map]; Strand: c
      • AT2G01310.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: cyclin-dependent protein kinase 3...
        Distance: -1345; Region: intergenic
      • AT2G01320.3 - [+] show detail - ABC-2 type transporter family protein
        Distance: 144; Region: intergenic
    Flanking Genome Sequence: GT17915 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTTTTG CATTGTAAAA 
    TTATCGGTTT AGACTAAATG AAATTATCAA TTATTAGATG TCTAGAATGC 
    AGGCAACGTA AGGTACGAGA ATGTTTGGAC CGGACGCCAC GTCCCATTCT 
    CACGAATCGG ATGGTGTGTA TTTGACTTTT TCCCAATGGG CGGCTTCTTA 
    AAACTTATGA TCTTATTTAA TTAGGGAAAT TAATTCGGTT ATTAGTATAA 
    TAATTAAACA ATCTAAAGTT TGAGTTTGGT TGGATCGGAA TCTTCTTCAG 
    ACGTCGATCC TGACGTTAGC ACACTTGAGT TTTCAAGCAA TGTTCAAAGT 
    TCCCCACATC T

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17915 - 5-prime edge 
    TTTCCATCCT ACTTTCTCCC TGGCAAAACT AATCAACAAG ATTATAAAAA 
    ACTCTCTAAT AATTATTTAT TTTTTTTTGT AAATTTGGAA CCAATAATAC 
    TCTCTAATTA TAACGAAAAG ATATACCATC GATGTAGAAA ATATATGTAT 
    TTACATATTA TAATTGGTAT TTGCCAAAAA GAAAATTGTA AATATTATAA 
    TTAATAGATC TAAAATTAAT AAATCTTTAT AATATTATGA ACTTCTGAAC 
    AAAAATTAAT AATAAATAAC ATGTGAAAGA TTTTATTACG AGACGGACTT 
    ATACGAAAAT ATGTTTGAAT CAACATTTAA AACTTTAAAC AATTGTTAAT 
    ACGATGTTTT AATATGGGGA ATCCTTAAAT TACATTTAAC ACATCAATAT 
    TTCGCTTCGG ATCACTATTA GTTCTATCTT TTGTATGATC AATTTTGCTT 
    CCCCCACCAT GATGTGTTAT ATCTTCTATA GGATCAATTT CGCTTCCTCT 
    CAAAATTTAT CAATAAAAGT ACCATAAAAA AAACTTGTTT ATATTTTATT 
    GATTTAGGCC CTGTTTGTTT CTCCATTT

AT2G01310.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: cyclin-dependent protein kinase 3;2 (TAIR:AT1G47210.1); Has 37 Blast hits to 37 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01320.3

Model type
Protein coding
Short Description
ABC-2 type transporter family protein
Computational Description
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G25620.2); Has 387349 Blast hits to 354243 proteins in 4108 species: Archae - 7085; Bacteria - 307989; Metazoa - 8597; Fungi - 6708; Plants - 5387; Viruses - 19; Other Eukaryotes - 51564 (source: NCBI BLink).
Link
InterPro Scan - TAIR