1. Home
  2. Mutant Lines
  3. GT17928

GT17928

CSHL Arabidopsis genetrap mutant lines

Original: GT17928

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17928

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 216988 [Map]; Strand: c
      • AT4G00467.1 - [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
        Distance: -912; Region: promoter
      • AT4G00480.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon9 (CDS)
      • AT4G00480.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: GT17928 - 3-prime edge 
    GTAGAGGATT TTACCGACCG TTACCGACCG TTTTCATCCC TACATGCAAA 
    AACCCTGAAA ACTTGATGTA AAGTTAATGG CACATCGCAT ATCGGTTCAA 
    GAAAGTCTAA ATAAATATAA CATTTCATCA AAAGTTTAAG AAAATATAAG 
    AATTTTTACT AAGAAGAACA TTAAAACAAA TCACCAATGA CTCTTCTCCT 
    TCTCTCGACC AATCATTCCT ACGGACGCAA CTGCAGCCCC GCGAAACTGC 
    ATGCATAAAC CCAAAAACGT TACGTGTAAG TCAAGAAAAC CCAAATCTGC 
    CTTTTCCAAA CATCAGTAAG ATTAATTTAC CTTGGCCTTG AGATTCAATG 
    TGAGGAACTT ATTGAGCGTG TGAGATCTAA CAGAGAAAGC ATCCATGTGA 
    AGATTGCTCA GAGTTTCCAT GATGTCCGCA ACTATGTAGT CTCTGTAAGA 
    ACATCTTACT TCGATCACAA CTTCTGTTTC TTTGAGTTTA ACTCTCAAAT 
    GTGTCTTATC TCTGAAAACA GTGACTTGTT CGGTTTCTCC TGAATTGTCA 
    TCGATCTTCG TGCTATCATC GTAGTTCCCT GATGTCTCTT CGATCAACAC 
    AGAGTCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10774709 [Map]; Strand: w
      • AT5G28715.1 - [+] show detail - transposable element gene
        Distance: 4232; Region: intergenic
      • AT5G28720.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -1422; Region: intergenic
    Flanking Genome Sequence: GT17928 - 5-prime edge 
    TCTCTCGACG ATTAAAGGGG AACACATATA AAAGCCAAAA AACCCTAGAA 
    CGAAGTCATT ATTCCCCCTT CAAAAAAAAA AAAGG

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT17928 - 5-prime edge 
    TAAAGGGGAA CACATATAAA AGCCAAAAAA ACCT

AT4G00467.1

Model type
Protein coding
Short Description
Calcium-dependent lipid-binding (CaLB domain) family protein
Computational Description
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G63220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00480.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
Computational Description
ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1473 Blast hits to 1082 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00480.2

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
Computational Description
ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1481 Blast hits to 1090 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1462; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28715.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G28720.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR