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GT17953

CSHL Arabidopsis genetrap mutant lines

Original: GT17953

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17953

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 30094 [Map]; Strand: c
      • AT4G00070.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT17953 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAATGATCAG 
    TATCCATCCT TAATTCTTGG TAGGGATCAG TATCCATCCT CAAACCCTAT 
    ATCAATACCA AACATACAGA AACTCAGGAT CAAACAAGCA TAAACCCAAT 
    TCAAATCCAG AAATAAGAAG GAAGATGCTC TTAGTACGAC TGCAATAAAA 
    ATTTATATCA TATTAACAAC AATTTAGCTA TGGTTTAATT CACAGCATAT 
    AAAAATATGA AAAACCTCTC ATTTCTTATA CATAATTTTT AGAATCAAAC 
    CTATAATATA TTAGGAAAAT TTAAACTAAA AATGTGGATA GTTTGGTCAA 
    CAAGAGAGGA GCCAGTCGAA TATATTAACA AGTGCGCAAT GTGCATACAT 
    TCCAAAAGAG TTGGGTATCA GATCCTTTTT CTATGAATAA CTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 30030 [Map]; Strand: c
      • AT4G00070.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT17953 - 5-prime edge 
    CTTTCTCCCT GCTGATATAT GACATACGAG GTATGTTTGT CAATATCGCA 
    AGAGCAGACA AAACATTATA AATTTATCTT ATCATCTTCA TTGAGTGTGT 
    TTTTTTGGCT CTGCACAGCA ACTTCTACAG CTGTGTAACA ATATGGGCTA 
    TGAGAACTCT GGTGTAAAAG CAAGCAACAT AGACCGTTGT CTTCGAAACA 
    CCAAACCCTC CGAATTTCAA TCTCTTGCCG ATAAAATATG TTGCATCTGT 
    CAGGTTAAAG TCCAGATTGA GTCTTTCAGA AAGATTATTA TAGAAATGAG 
    ATGCGTT

AT4G00070.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G36950.1); Has 668 Blast hits to 668 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 45; Plants - 506; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR