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GT17977

CSHL Arabidopsis genetrap mutant lines

Original: GT17977

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17977

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 437195 [Map]; Strand: w
      • AT4G01010.1 - [+] show detail - cyclic nucleotide-gated channel 13
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT17977 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTGTT GTTTGCTTGC 
    TTTCTTTAAT CTCTGTCTTT TTTTTTTTAA AAGGAATTTC CGGGAAAACT 
    TGGGGTTTAA AGGATTCCCC AAAAAAAAAT CCTTTTTTGG GGAAAATTTT 
    TTGTTTGGGG CCCAAAATGG GTTTTCCAAG GGAACAAAAT TGGGTTCCGG 
    AAAAAAAAAA GCTGGCCCCT CCTTAAACCC CTTTTTAAAA AAGGTTCCTA 
    AGGGACTTAA AAAACCTTTA AGTTTGGGTC CCCCAAAAAA AAAAAAGAAT 
    TTTATTTTTG GGCCCCCCCC CCCAAAAAAT TTTTTAACCC CCCCGGGGTT 
    TTTTTTCCCA AACGGGAACA AAATCTTTTT TTTTGCCCCC GGGATGGCTT 
    TGGCAATGGA CCCCTGGGTT TCCCAAATCC CCATGGGGGA GGGGAAAAAA 
    CCCCGCCTTA ATTTCCCCCC AACCTTGGAA AAACCCCCCA GGGGGCCCCC 
    CCCCTTTAAA AAGGCTTTCC CCCCCCTCCC CCTGGGGTTC CCGTTAAAAA 
    CCGGTTA

AT4G01010.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 13
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR