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GT18004

CSHL Arabidopsis genetrap mutant lines

Original: GT18004

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18004

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10740430 [Map]; Strand: w
      • AT4G19740.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT18004 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTGAAA CCCACAGAGT 
    CTTCATCCCC CAAAGGCACG AATACGAATT CTCCGCCTTC ACTGAAATCG 
    TCGGGCAGAA AAACCATAAC GTGAAGACCC TCTT

AT4G19740.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Computational Description
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19720.1); Has 4184 Blast hits to 4027 proteins in 775 species: Archae - 13; Bacteria - 1396; Metazoa - 1408; Fungi - 971; Plants - 145; Viruses - 60; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR