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GT18020

CSHL Arabidopsis genetrap mutant lines

Original: GT18020

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18020

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10987230 [Map]; Strand: w
      • AT1G30860.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT18020 - 5-prime edge 
    ACTTTCTCCC TGTGCAGGAG ACGATGCAGA TATATGTGAA GACGACGATT 
    GGCTCAAGTC ATCTCTATCA TCTTGCTCTT CACCTCCTCT TAATGGCTCT 
    TCTTTGATTT CTTCTTCAAT TTCAAAATTT TCTTCCTCCT CTTCTTCTTG 
    TTGAAATTCC CTTTTTTTGG AGTGCTTATC CGAGTGTGTC TGTACACGGG 
    ACATCATGAG ATTATCGATC TTCTCTCGCA ACCCGCTGTC GAGGAAATCT 
    GTCACCGTTC TTCTGTATTA AGCAGGGAAA TTCATTTTCT TAGTCAGTTA 
    TTAACCATTA AGAAACATGA GCTTGTCAAT TTTGATGGTT ACTTACCGCT 
    CAAGGAGTCT GCGTATGTCA TCTTTCTCAG ACCTAGTGTT CATTACTTCC 
    AGGTACCGTG ACTTCCTCAA TTCCTCCCAG TAACTCCGAG GCCTAGCTAT 
    TTCACTAAGC CAGTCGTCGT TATATTCTCC ATAATAAGAC TGCTCATCTG 
    CATACTCTTC TTGTTCTCCC CATCTATTCA AATAGGATGT TTCTTGTTGA 
    TCAAGGCACT GGTCCATCTC ATTACTCTCA TGAACTAGAC CTTCTGTTTC 
    TCGAGTTTCT TGCATATACT TTCCCACATT GTTCTCGTCT TGATTCTGTC 
    TCAACCACGA TTCTCGAGTT AAACATTCAC TCGGGC

AT1G30860.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: stem, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G34920.1); Has 4912 Blast hits to 4241 proteins in 362 species: Archae - 9; Bacteria - 172; Metazoa - 2090; Fungi - 292; Plants - 512; Viruses - 97; Other Eukaryotes - 1740 (source: NCBI BLink).
Link
InterPro Scan - TAIR