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GT18024

CSHL Arabidopsis genetrap mutant lines

Original: GT18024

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18024

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17180068 [Map]; Strand: c
      • AT3G46620.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: -1; Region: promoter
    Flanking Genome Sequence: GT18024 - 5-prime edge 
    ACCGTTAACA CTCACCTACA AAAAACCACA TTATATAAAC AAATCTTTTT 
    TCTCCTTTTT CCTTCTCTCA TCAACTTCAG ATCCTTTCAC CAGCAACACA 
    AGTTATTTTC AAAAGATGAT GCCAAATTCT AGATCGGCGA CAATAACTCC 
    GACGACAGAA TCAACCACCA CCACCACAAC AACAACAACG ACTCTAACGA 
    CGTCGTATTG GTGTTACAGT TGTACACGAT TCATCAGCGT TTGGGAAGAT 
    CAAGACGCAA ACGCTGGAGT CTTATGTCCT TATTGCAACG GTGGATTCAT 
    CGAAGAGATT GAAGATTCTT CTAATTCCAC CGTCGCGGCG ATTCCGGCTT 
    CGACTCCGGA AGTTAGATCG GTTGAGGAAA CACATAGATC TATAATTAGA 
    CGTCGTAGAT CTAATCGCCG GACGTCCTTT AATCCGGTAA TCGTCTTAC

AT3G46620.1

Model type
Protein coding
Short Description
zinc finger (C3HC4-type RING finger) family protein
Computational Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8876 Blast hits to 8844 proteins in 271 species: Archae - 0; Bacteria - 6; Metazoa - 2388; Fungi - 760; Plants - 4652; Viruses - 43; Other Eukaryotes - 1027 (source: NCBI BLink).
Link
InterPro Scan - TAIR