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GT18052

CSHL Arabidopsis genetrap mutant lines

Original: GT18052

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18052

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9519967 [Map]; Strand: w
      • AT4G16920.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT18052 - 5-prime edge 
    CTTTCTCCCT GCTGGTAAGG CCACATGCTT GAAGCATGAT CGTAGGATGA 
    GTTCTCGCGC ATCTCTTTCC AATTTGAAGC AATTACAGAA GCTAAAGGAT 
    TCCCTACGTA AGCGCCAATC TACGACGTAG TTCTTATAAT CATCATCATA 
    CAACGCATCC CAGAAACGTT CACATGTATA TTCAATGTTT TCAGATAATG 
    GTACGTGATC TTCCATTGTC GCTACCACAG TTGCATCACT CAACGCCTTG 
    ATGACACCTC TACAGTCTGT AAAGTCGGCG ACCATTAGAT TTGTCAGCCT 
    GAAAATGTTT GGGGAGATGT TTTTCAACCT CTGGCAACAA TACATCAGTA 
    GTTCAGTGAG CCTCGAGAAA TTCTCAATGC AGCAGGGAAC TTCTTCAATG 
    GCTGTGTTTT CTAGATAGAG ACATTCGATA CTGGTTGAAA TCAGAGGAAA 
    AGTTCTCAAA CTTGAGCAAC CACTGAGATC AAGCATTTTG AGAGATGACA 
    AGTTGACATC GATAGGAAGA ACCTTCAGCC CTGTG

AT4G16920.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Link
InterPro Scan - TAIR