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Mutant Lines
GT18082

GT18082

CSHL Arabidopsis genetrap mutant lines

Original: GT18082

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18082

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 1636336 [Map]; Strand: c
- AT5G05540.1 - [+] show detail - small RNA degrading nuclease 2
  Distance: 0; Region: exon1 (5UTR)
- AT5G05540.2 - [+] show detail - small RNA degrading nuclease 2
  Distance: 0; Region: exon1 (5UTR)

ACAGCAGAAC GGAAGCTTCT GACGGCGGCG GCTCGCTCGC CCTCGTAAAG 
GAGACAGATT GACAACACGT GCATAATCTA TAATGGTCAC GTGACTTCAC 
ACACACACAC ACAAACCACA ATTATGGGCC TTGGGCATCT TTTTTTATAA 
CTAGGTCTAT ATGTCTTTTC GTTGCTTTCA CTTATTTATT TAATTATTAA 
ATTTTACACA AGAGATGTTG AACAAGCAAG CTATATACAG CAAGTAGAAA 
TGTGGAATAT GCATCTTTGG ACATTTTTAC ACAAAAGAAG AATACCAAAA 
AAGCTATAAA AAAAACCCTA AAACTTGGGT CTTGAATAGA TAGGATGACG 
ACAAAGAGGA CAAGAGCTTT TGGTCCGAAT CCAGCGCCAA AGACAGAGTT 
TATGAAAAAC ATGACAACAA TCATGTGTCT CTATAGATTC TTCGTCGTCG 
CATAATTCCT CAAGGCATAT AGTACATTCG TTGACCGG

AT5G05540.1

Model type: Protein coding
Short Description: small RNA degrading nuclease 2
Computational Description: small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G05540.2

Model type: Protein coding
Short Description: small RNA degrading nuclease 2
Computational Description: small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR