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Mutant Lines
GT18172

GT18172

CSHL Arabidopsis genetrap mutant lines

Original: GT18172

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18172

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 29844232 [Map]; Strand: w
- AT1G79340.1 - [+] show detail - metacaspase 4
  Distance: 0; Region: exon2 (CDS)

CCTAGCCCTT GTAACCATTT CTCTGTTTGA TATCTCACCG TCTGTCTCCT 
CCAATATCGT CTGTATCGAA TTGCTCATGG CTCCATAAGC CTCAGTTGGT 
TTCCCCGCTG GAGTCGCATC AGCAGAGGTC TGATCGGTTT GGCAACCGCT 
GATCAGTATC CCGCTGTCTG GAAGCGGAAC CGAACCTCTG GATCCACCAG 
CATAAACCTC TTCTTTACTC CCAACGTGTG TCTGCATAGC GGGTTTCACA 
AT

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 29844418 [Map]; Strand: w
  - AT1G79340.1 - [+] show detail - metacaspase 4
    Distance: 0; Region: exon2 (3UTR)
Flanking Genome Sequence: GT18172 - 5-prime edge
```
CAACGCTCCT TTCATCTGTT GAAACAGAGA TTTTATTGAA TGTTTTTTAC 
TACGACACGT TGATTGAAGT TTCTGGTCGC AAAAATAAGC CTGTTTTTTT 
TTGCCGGTTG GAGGCGTTTA AGGAAATTAC CAGGTAAGGG GGGTGGGGTC 
C
```

AT1G79340.1

Model type: Protein coding
Short Description: metacaspase 4
Computational Description: metacaspase 4 (MC4); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 5 (TAIR:AT1G79330.1); Has 1195 Blast hits to 1161 proteins in 285 species: Archae - 6; Bacteria - 340; Metazoa - 3; Fungi - 271; Plants - 332; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).
Link: InterPro Scan - TAIR