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GT18177

CSHL Arabidopsis genetrap mutant lines

Original: GT18177

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18177

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30348025 [Map]; Strand: c
      • AT1G80745.1 - [+] show detail - Transcription factor TFIIIC, tau55-related protein
        Distance: 0; Region: exon4 (CDS)
      • AT1G80750.1 - [+] show detail - Ribosomal protein L30/L7 family protein
        Distance: -776; Region: promoter
    Flanking Genome Sequence: GT18177 - 3-prime edge 
    TCTTTTTGCT TAAACCATGT CTTAATCGTG TAAGATTAGA TGATCTCTCA 
    GGTGGGAGAA TATATAGCAA CGATTGGTAC ATGCCTTGCT TTCTCTGACC 
    AAGGTTAGTT TCACTTTTCC TCTTTATTAT CAAACATGGA AACACATGTT 
    ATTGTTTCAA GTAATTATTC TGTCCCTTCA AGATGCTGAT TTGGGGTTGC 
    GGTTTCTTCA TTTGTCTGTT TGCACAAGGT GGTAACCAGA CGCCACAGAA 
    GAAGACAGTT GACCCTGTTG CCAAACTCCA CAAGATTCTC AAGTTTAGGT 
    TAGCACCATT AGACAACGAA GATGGGAGTA A

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30347826 [Map]; Strand: c
      • AT1G80745.1 - [+] show detail - Transcription factor TFIIIC, tau55-related protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G80750.1 - [+] show detail - Ribosomal protein L30/L7 family protein
        Distance: -975; Region: promoter
    Flanking Genome Sequence: GT18177 - 5-prime edge 
    CCGGATTCAA AGTATCCAAA CCCTATGAGA ACCAAACAAA ACCAAACTTA 
    TAAAACAAGA GAATGCAAAA AGTGAAATGA AAGAATTGGA TTGAACTAAC 
    TGATAAAGTA TAAGGAGCAT CTGCTGGAAT GTCAATGTGC CTTGAAACGT 
    CATCAAGATC AATCATAACA TGTTCATCCT CCATCTCTGT ATCAATGTGT 
    TTATTAGGGT GGAGAAGAAC ACAAAGATAT TTATGAATCC AAAAACTTTC 
    TCACTTTCTG AACGCGATTA GATCCAAGAA ATTATCATTC TTACATCTCC 
    TAAACAACAA ATTTATGTTG AGAATGGTTC ACCTCTTTCT TTTTTTCCTT 
    TCAATCTTTC GAGCAAAT

AT1G80745.1

Model type
Protein coding
Short Description
Transcription factor TFIIIC, tau55-related protein
Computational Description
Transcription factor TFIIIC, tau55-related protein; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIIC, tau55-related (InterPro:IPR019481); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIIC, tau55-related protein (TAIR:AT3G15420.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80750.1

Model type
Protein coding
Short Description
Ribosomal protein L30/L7 family protein
Computational Description
Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1152 Blast hits to 1152 proteins in 343 species: Archae - 126; Bacteria - 0; Metazoa - 424; Fungi - 213; Plants - 191; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link
InterPro Scan - TAIR