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GT18250

CSHL Arabidopsis genetrap mutant lines

Original: GT18250

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18250

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13694 [Map]; Strand: w
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -335; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
        Distance: -933; Region: promoter
    Flanking Genome Sequence: GT18250 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TATCCTCCGA 
    GATACCTCAC GGGATTTCCT CTTGGTATCG CTGTGCTGGA TTCACGAAGA 
    TCGAGCAGCT TGTTCGAAAA CCGGCACGAC GAGTGCGGCG GAGTGGAGGA 
    GAACATGCCG ACAGCGAGAG CGCGAGCGCC ATGTTTGCAA ATTGCAATTT 
    CCATGGTTAG GTTGTTGCAC GAAGAAGAAG AAGAGATACT CTGTTATTTG 
    GGTTTCTTTT CTAAAAAGCC CATTTGGGTT TTATTTGCTT TATCTCATGA 
    GTCTAAGCCC AAGCCCAAGG AAATAGCTTG CACGTGCGCG TCACGTGTCT 
    ACGATAAAAC CCCCGCAACG GCGAGCGGCT TTGCCTTGCT CATTCA

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00030.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00040.1

Model type
Protein coding
Short Description
Chalcone and stilbene synthase family protein
Computational Description
Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR