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GT18389

CSHL Arabidopsis genetrap mutant lines

Original: GT18389

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18389

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 404153 [Map]; Strand: c
      • AT1G02140.1 - [+] show detail - mago nashi family protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G02145.1 - [+] show detail - homolog of asparagine-linked glycosylation 12
        Distance: -447; Region: promoter
      • AT1G02145.2 - [+] show detail - homolog of asparagine-linked glycosylation 12
        Distance: -447; Region: promoter
      • AT1G02145.3 - [+] show detail - homolog of asparagine-linked glycosylation 12
        Distance: -447; Region: promoter
      • AT1G02145.4 - [+] show detail - homolog of asparagine-linked glycosylation 12
        Distance: -447; Region: promoter
    Flanking Genome Sequence: GT18389 - 5-prime edge 
    CGTGCTCAGG AATGCAAGCG TATCGTCTCC GAGAGCGAGG TCCTTTTTCT 
    CTCTCTCTTC CGATTTGCTT CTCTCTTGTT AATTGTCCGC GTTCATCTCA 
    CTCGACGATA TAATAGCCAA TTAGGGTTTT AGTGATTTTG CTTCGATTTT 
    TGTCGATCTA GGGCATCTTT CCTGACTAGT GTTGTAGGTT TAGAACCCTC 
    TTCGTTGTTA ATGCTATTAT CTAGGAATAA TGGATGATTT TGTACAACCT 
    GACATGTGAT TATTTGTCTG CGGGTAGATT CTGAAAGAAG ACGATAACAA 
    TTGGCCGGAA CCTGACCGTG TTGG

AT1G02140.1

Model type
Protein coding
Short Description
mago nashi family protein
Computational Description
MAGO NASHI (MAGO); FUNCTIONS IN: protein binding; INVOLVED IN: pollen tube guidance, sex determination, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mago nashi protein (InterPro:IPR004023); Has 476 Blast hits to 476 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 96; Plants - 76; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02145.1

Model type
Protein coding
Short Description
homolog of asparagine-linked glycosylation 12
Computational Description
homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT5G14850.1); Has 794 Blast hits to 784 proteins in 185 species: Archae - 0; Bacteria - 23; Metazoa - 309; Fungi - 268; Plants - 100; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02145.2

Model type
Protein coding
Short Description
homolog of asparagine-linked glycosylation 12
Computational Description
homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02145.3

Model type
Protein coding
Short Description
homolog of asparagine-linked glycosylation 12
Computational Description
homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); Has 793 Blast hits to 783 proteins in 185 species: Archae - 0; Bacteria - 23; Metazoa - 309; Fungi - 268; Plants - 100; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02145.4

Model type
Protein coding
Short Description
homolog of asparagine-linked glycosylation 12
Computational Description
homolog of asparagine-linked glycosylation 12 (ALG12); FUNCTIONS IN: alpha-1,6-mannosyltransferase activity; INVOLVED IN: ER-associated protein catabolic process, protein amino acid terminal N-glycosylation; LOCATED IN: intrinsic to endoplasmic reticulum membrane; CONTAINS InterPro DOMAIN/s: Alg9-like mannosyltransferase (InterPro:IPR005599); BEST Arabidopsis thaliana protein match is: Alg9-like mannosyltransferase family (TAIR:AT1G16900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR