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GT18417

CSHL Arabidopsis genetrap mutant lines

Original: GT18417

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18417

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5397524 [Map]; Strand: c
      • AT1G15680.1 - [+] show detail - F-box family protein
        Distance: 2885; Region: intergenic
      • AT1G15690.1 - [+] show detail - Inorganic H pyrophosphatase family protein
        Distance: -1466; Region: intergenic
    Flanking Genome Sequence: GT18417 - 5-prime edge
    ACTAGTGACC ACTCATGCTT TATCTTTGTT CCCTTTTGCA GGTTGCTAAT 
    GAATCTCGAA AAAATTATTA TCATGTAAAG GAAATCTTTC CTAGTTTTGT
    GGCTGACATA CTTTTATCTT TCAATCACGA TTTAGTTTCC ATTTCTTTCT
    AAATTATATA ATATCATTCA TGGCCTAAAG GTTTATCCAA GTGGTGACTG
    GTGTGGTAAA CGTAGAATTC AAACCAATCC ACCTAATTAA AGTTAAAACA
    ATAATTGAAT TAGAAAGAGG CGAATGATTT TACACGGTAA GATTTGTGAC
    TTTCCATGAT ATATGATTAG ATTATCGTCG TCGTCGTAAT TATAATGTTT
    TCTATTTAGC CTCACCAAAA TTTGGTGACA TCTCAATGTT TATAGTTATA
    TATTGACAAT GCTATAAGGC GTTGATAAGT ATCAATCGAA TTGTGAAAAA
    AAAAAAAAAA AAA

AT1G15680.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G49990.1); Has 875 Blast hits to 870 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 875; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15690.1

Model type
Protein coding
Short Description
Inorganic H pyrophosphatase family protein
Curator Summary
Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.
Computational Description
AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: response to water deprivation, response to salt stress, establishment or maintenance of transmembrane electrochemical gradient, leaf development, auxin polar transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 6470 Blast hits to 6448 proteins in 793 species: Archae - 67; Bacteria - 1322; Metazoa - 5; Fungi - 1; Plants - 304; Viruses - 0; Other Eukaryotes - 4771 (source: NCBI BLink).
Link
InterPro Scan - TAIR