1. Home
  2. Mutant Lines
  3. GT18467

GT18467

CSHL Arabidopsis genetrap mutant lines

Original: GT18467

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18467

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14361893 [Map]; Strand: c
      • AT4G29130.1 - [+] show detail - hexokinase 1
        Distance: -6790; Region: intergenic
      • AT4G29140.1 - [+] show detail - MATE efflux family protein
        Distance: -7026; Region: intergenic
    Flanking Genome Sequence: GT18467 - 3-prime edge 
    ACCCGACCGG ATCGTATCGG GTTATCCATC ACACACTAAC AAGTGTCTAA 
    AAATGGAATA ATGGGCACAT GCATAAGTTG TGGCGATCGA AAAGGATCCA 
    CTACATACTT ACTTTATCAT TTAATTCGAT CTATATATAT ATGCATTCAC 
    AAATCATACA TTATTGTTAT ACAAAGCTGA TTGTTGCAAA ATTTAACCTG 
    TAAAGGGATC AAAATATCGT ATCTCTGTGT GTATATCCAC AAAAATACAT 
    ACGTGGTGGT GAGGCAAACA GAGGGTTTTA TGCCAGTGAA GTTGTCAACC 
    ACTTTGTAAT TATTTTTCGG GGGTCAAATT ATTTTTGTAA TTTGTTGAAC 
    AGAGATTCTA CTGTTCTTTT GTTTTGTTTC TACTTATATT TTCTTCCAAC 
    TCCTATCTTT GAATTATTAT TTAATTTTGT TTTTAAAATT A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14361772 [Map]; Strand: c
      • AT4G29130.1 - [+] show detail - hexokinase 1
        Distance: -6669; Region: intergenic
      • AT4G29140.1 - [+] show detail - MATE efflux family protein
        Distance: -7147; Region: intergenic
    Flanking Genome Sequence: GT18467 - 5-prime edge 
    CCCTTGCATA TACCTAATCT TATTCCCACT TTACAAACAT GGTGCAGATG 
    GAACATCACT GTTCACAAGA TTTTAAATAT GGTTTATAGG AGTACATAAA 
    TTAAGCTTTA GTATATAATT TTATATGCAC CATATGTGTG TATATAATGG 
    ATGGGCTTCG ATTGGAATGA TAAGCTTAAT TAAGTTCATA TGAGTTTTCA 
    TTGTGCTTTT GGATCCTTTA TATATAACCC ATGCTAACTC AAAATCTGCA 
    ACTACCATGT GAATACTAGC TAGCGTGATA AAGATGTACA AATTTATCTT 
    GAATTGTACT GCGATCGACA AGATGCAACA ATGGATGAAA AAAAAAAAAT 
    TGCACCAAAA TCCCCAGGCG TGGGG

AT4G29130.1

Model type
Protein coding
Short Description
hexokinase 1
Curator Summary
Encodes a hexokinase (HXK1) in the plant glucose-signaling network. Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment.
Computational Description
hexokinase 1 (HXK1); FUNCTIONS IN: fructokinase activity, hexokinase activity, glucokinase activity, zinc ion binding, ATP binding; INVOLVED IN: sugar mediated signaling pathway, hexose catabolic process, glucose mediated signaling pathway, programmed cell death; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Hexokinase, N-terminal (InterPro:IPR022672), Hexokinase, conserved site (InterPro:IPR019807), Hexokinase, C-terminal (InterPro:IPR022673), Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: hexokinase 2 (TAIR:AT2G19860.1); Has 2426 Blast hits to 2148 proteins in 325 species: Archae - 0; Bacteria - 92; Metazoa - 1300; Fungi - 606; Plants - 290; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29140.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: shoot apex, embryo, hypocotyl, root; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G19700.1); Has 10278 Blast hits to 10238 proteins in 1962 species: Archae - 240; Bacteria - 7294; Metazoa - 150; Fungi - 320; Plants - 1306; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).
Link
InterPro Scan - TAIR